Charlotte Weaver
02799cea8e
No relative imports "up"
2018-07-12 12:59:34 -07:00
Charlotte Weaver
ba9e5f1e41
flake8/lint cleanup
2018-07-12 11:52:24 -07:00
Charlotte Weaver
f466ef6553
Added entry point to run cellxgene from console
2018-07-10 12:56:42 -07:00
Charlotte Weaver
a3bf802aec
Add example dataset
2018-07-06 16:03:24 -07:00
Charlotte Weaver
071c24d0f4
Add client build script
2018-07-06 15:59:20 -07:00
Charlotte Weaver
d937485034
Merge branch 'csweaver/packaging' of github.com:chanzuckerberg/cellxgene into csweaver/packaging
2018-07-06 15:51:08 -07:00
Charlotte Weaver
0639759a90
Initial packaging working
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pip install works if client files are built and moved manually
2018-07-06 15:44:22 -07:00
Charlotte Weaver
558950852e
Merge remote-tracking branch 'origin/csweaver/addbackend' into csweaver/addbackend
2018-07-06 15:43:37 -07:00
Charlotte Weaver
cd1b67fd09
Rename diffexpression
2018-07-06 15:41:08 -07:00
Charlotte Weaver
5b9ddfa1a6
Added documentation to filter
2018-07-06 15:40:21 -07:00
Charlotte Weaver
354eacc3c8
Remove cell ids from engine
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Previously I just removed them from the driver
2018-07-06 15:38:42 -07:00
Charlotte Weaver
cf12acd47c
Added documentation to filter
2018-07-06 10:26:46 -07:00
Charlotte Weaver
6652c07495
Remove cell ids from engine
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Previously I just removed them from the driver
2018-07-06 10:26:33 -07:00
Charlotte Weaver
e3bf06ca61
Config file no longer necessary
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Config is solely from environment variables instead.
2018-07-06 10:13:24 -07:00
Charlotte Weaver
01de23c533
Fixed some faulty requirements
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Not tested on latest flask version yet
The latest anndata is causing problems with sorting numeric indexes. I made a separate issue to actually fix that at a later point.
2018-07-06 10:12:32 -07:00
Charlotte Weaver
451f95b0a4
Initial packaging working
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pip install works if client files are built and moved manually
2018-07-05 17:06:51 -07:00
Charlotte Weaver
85506db971
Updating to latest cellxgene client code
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Fixes the build error in the old version.
Reverted the API version since we changed directions from updating the API to refactoring the server structure instead.
2018-07-05 13:37:26 -07:00
Charlotte Weaver
2da62720dd
Better documentation for driver/engines
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Removed the REST v2.0 documentation in favor of getting v1.0 working with driver/engine model
2018-06-29 17:17:14 -07:00
Charlotte Weaver
56c932a443
Fixed categorical filter not being converted to type, added tests
2018-06-29 17:16:00 -07:00
Charlotte Weaver
40f5b94075
Consistency with quotes
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' -> "
2018-06-29 13:14:58 -07:00
Charlotte Weaver
ba13e32206
Add python's requirements.txt
2018-06-27 13:40:35 -07:00
Charlotte Weaver
a60b3ea296
Put cellxgene readme back in
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Will update readme to make server side work once build/packaging in.
2018-06-26 11:51:58 -07:00
Charlotte Weaver
dd5fa57259
renaming backend, cellxgene to server, client respectively
2018-06-26 11:41:32 -07:00
Charlotte Weaver
59dcfe2bc4
Correct tabs to spaces
2018-06-26 11:22:34 -07:00
Charlotte Weaver
c7f9dc0bb9
Remove redundant app start
2018-06-26 11:21:35 -07:00
Charlotte Weaver
67f2e19f39
Added tests for all endpoints
2018-06-25 15:43:18 -07:00
Charlotte Weaver
ca16447115
Style guide cleanup
2018-06-22 17:43:10 -07:00
Charlotte Weaver
15ce4cc338
Add back in /expression and /diffexp endpoints
2018-06-22 17:18:22 -07:00
Charlotte Weaver
ee8bb510ff
/cells is working
2018-06-22 11:52:05 -07:00
Charlotte Weaver
9b4bcb7f7b
Original /initialize working
2018-06-22 11:00:22 -07:00
Charlotte Weaver
1621d20bc4
Minimum working iterator version
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Checkpointing. This is a minimum working version using the iterator. I basically hacked consuming the iterator since I want to switch directions, but this is a good place to come back to.
2018-06-22 10:01:52 -07:00
Charlotte Weaver
fabd3ca2ff
Implement driver class for scanpy
2018-06-07 15:22:32 -07:00
Charlotte Weaver
9cf300caeb
Fleshed out documentation and params for methods
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Given feedback from designing rest v2.0
2018-06-05 16:05:04 -07:00
Charlotte Weaver
e84793ede9
Add backend to cellxgene repo
2018-06-01 11:16:23 -07:00
Colin Megill
37df1d7a67
Merge pull request #73 from chanzuckerberg/continuousLegend
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continuous legend
2018-05-30 11:22:47 -04:00
Colin Megill
2b70d165be
Merge pull request #72 from chanzuckerberg/bkmartinjr-regraph
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fix regraph metadata bug
2018-05-30 11:22:07 -04:00
bkmartinjr
bf6ebd5741
reset all cells on graph reset
2018-05-29 21:40:51 -07:00
bkmartinjr
9c2870e995
fix logic inversion on regraph
2018-05-29 21:38:47 -07:00
Colin Megill
1565f47f6e
continuous legend
2018-05-30 00:21:11 -04:00
Colin Megill
67e65e7535
Merge pull request #71 from chanzuckerberg/bkmartinjr-staterefactor
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introduce new selection state machinery
2018-05-29 15:04:21 -04:00
bkmartinjr
20756764f9
add comments
2018-05-29 11:58:57 -07:00
bkmartinjr
2f23e8675f
fix typo generating exception
2018-05-29 10:01:33 -07:00
bkmartinjr
089d04ea9f
move schema sniffer to util
2018-05-28 16:52:32 -07:00
bkmartinjr
cfd13cad41
refactor regraph functionality to use crossfilter; add reset graph
2018-05-27 11:49:50 -07:00
bkmartinjr
2c79e98809
reorganize TypedCrossfilter code
2018-05-27 08:02:47 -07:00
bkmartinjr
7874e6a68b
better caching of graph regl data
2018-05-25 17:27:50 -07:00
bkmartinjr
007e1d3a66
remove detritus
2018-05-23 21:01:28 -07:00
bkmartinjr
cc661f31e1
first cut at high performance crossfilter
2018-05-23 20:59:13 -07:00
Colin Megill
f5f9700f55
Merge pull request #57 from chanzuckerberg/responsiveBrush
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reset brush on window resize
2018-05-14 23:01:46 -07:00
Colin Megill
2b2bdba8ea
reset brush on window resize
2018-05-14 23:01:22 -07:00
Charlotte Weaver