Commit Graph

436 Commits

Author SHA1 Message Date
Severiano Badajoz
518768e8f8 change asset src's to S3 links (#1734)
* add disclaimer about changing the script

* add hash for obsolete browser script

* add explicit domain img-src

* add single quotes

* add quotes to `data:`

* change order and remove single quotes

* lint, remove extra slash, and make hash an array

* add links to S3
2020-08-12 10:38:49 -07:00
maniarathi
44c738e2f4 Bumping version of cellxgene for desktop release (#1733) 2020-08-12 09:58:52 -07:00
Severiano Badajoz
f221856ae1 add CSP sources for obsolete browser prompt (#1731)
Adds script hash and explicit domain to `img-src` directive
2020-08-11 16:50:46 -07:00
maniarathi
49b89ba7af Swap using href to using origin+pathname to avoid errors with including any query parameters from being passed in. (#1722) 2020-08-07 10:02:22 -07:00
Severiano Badajoz
018daacdbb create truncation edge case snapshot tests (#1695) 2020-08-07 09:54:01 -07:00
Colin Megill
c913935d90 Login / Logout button (#1718)
* first pass auth button

* only pop anno dialogue if authenticated

* add config to ignore

* remove config
2020-08-06 14:39:58 -04:00
Severiano Badajoz
8d96477fae Remove hash source from CSP style-src directive (#1717)
* remove style csp hash generation + lint

* remove references to style_hashes
2020-08-05 16:43:35 -07:00
Severiano Badajoz
b18f96da77 check for bins change for canvas draw (#1693)
* check for bins change for canvas draw

* PR feedback
2020-08-05 15:20:03 -07:00
maniarathi
cdae4f9f10 Reorganize the server testing directory (#1705) 2020-08-05 08:31:02 -07:00
Severiano Badajoz
8bbc183647 Explicit Browser Support (#1682)
* add FastestSmallestTextEncoderDecoder polyfill

* remove nomodule from script import

* add browserslist

* add obsolete-webpack-plugin

* switch out modern-browser for preset-env

* add prompt on non target browser

* propagate prod changes to dev

* add core-js-3 and TextEncoder TextDecoder (#1671)

* add script to remove react, style html

* propagate changes to prod

* add script-ext-html-webpack-plugin for async

* more styling

* add eslint-plugin-compat

* extend compat plugin

* add existing polyfills

* add github fetch polyfill

* add AbortController polyfill

* change promptOnNonTargetBrowser to false

* propagate

* add browser links

* prettier

* add browser support to readme

* move polyfills to webpack

* remove CDN encoder polyfill

* Add no Explorer support

* fix incorrect package name

* propagate changes

* Update README.md

Co-authored-by: Ambrose J Carr <ambrosejcarr@users.noreply.github.com>

* add new deps

* create shared config

* swap out html-loader for filestream

* sanitize template

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
Co-authored-by: Ambrose J Carr <ambrosejcarr@users.noreply.github.com>
2020-08-03 12:50:09 -07:00
dependabot[bot]
bb2326525e Bump elliptic from 6.5.2 to 6.5.3 in /client (#1697)
Bumps [elliptic](https://github.com/indutny/elliptic) from 6.5.2 to 6.5.3.
- [Release notes](https://github.com/indutny/elliptic/releases)
- [Commits](https://github.com/indutny/elliptic/compare/v6.5.2...v6.5.3)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-07-31 13:54:56 -04:00
Bruce Martin
f2fbeff511 add support for corpora default_embedding field (#1696)
* fix mispelling

* re-implement re-embedding

* always load base embedding to fetch counts

* format

* lint

* fix tests

* lint

* fix accept handling

* test log

* more debug

* more

* more

* more

* more

* remove logging

* logging

* jsonify

* remove debugging logs

* lint

* clean up errors a bit

* fix issue found in PR review

* add support for corpora default_embedding

* fix botched merge

* PR review

* PR review
2020-07-31 07:36:48 -07:00
Severiano Badajoz
055511fe60 fix colorby popup settings (#1694) 2020-07-30 15:33:48 -07:00
Bruce Martin
75cb513dd9 re-implement re-embeddings (#1679)
* fix mispelling

* re-implement re-embedding

* always load base embedding to fetch counts

* format

* lint

* fix tests

* lint

* fix accept handling

* test log

* more debug

* more

* more

* more

* more

* remove logging

* logging

* jsonify

* remove debugging logs

* lint

* clean up errors a bit

* fix issue found in PR review

* PR review changes
2020-07-30 12:31:36 -07:00
Bruce Martin
bbef27b8c9 minor prose change on embedding chooser (#1678) 2020-07-27 19:34:04 -07:00
Bruce Martin
14cd1b9f0b work around blueprint restriction (#1677) 2020-07-27 12:52:22 -07:00
Bruce Martin
0a626537d5 subset embedding UI improvement (#1667)
* add user flag feature to annomatrix

* add implicit subsetting for partial embeddings

* lint

* add embedding cell counts to embedding choice menu

* layout
2020-07-27 09:58:14 -07:00
dependabot[bot]
ad1bda07e9 Bump codecov from 3.7.0 to 3.7.1 in /client (#1654)
Bumps [codecov](https://github.com/codecov/codecov-node) from 3.7.0 to 3.7.1.
- [Release notes](https://github.com/codecov/codecov-node/releases)
- [Commits](https://github.com/codecov/codecov-node/compare/v3.7.0...v3.7.1)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-07-27 11:53:57 -04:00
Bruce Martin
83d572cde2 force categorical treatment of user annotations (#1663) 2020-07-22 17:02:19 -07:00
Colin Megill
03bad04436 Embedding button to lower left, cell selection (#1658)
* embedding

* menu bottom left

* button

* change gutters to support lower toolbar

* fix scatterplot layout

* fix tests to match new layout

* fix smoke tests to match new layout

* better sentence, dataset.nObs to top

* scatterplot position

Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
2020-07-22 18:48:21 -04:00
Bruce Martin
a44da11f3f correctly handle non-string categoricals (#1660) 2020-07-22 12:14:31 -07:00
Bruce Martin
009fa2ff02 clear selection state upon subset (#1655) 2020-07-21 12:51:39 -07:00
Bruce Martin
2715157793 categorical UI improvements (#1649)
* return undefined for unknown fields

* memoize fetch response

* handle rename of user annotation

* performance and cleanup

* fix snapshots

* fix comment

* lint
2020-07-20 08:52:41 -07:00
Bruce Martin
410566f5e1 fix label selection on trunctated category lists (#1646) 2020-07-17 17:16:15 -07:00
Bruce Martin
b6412b5b8a ensure there is always an unassigned label in user created category (#1644) 2020-07-17 13:22:26 -07:00
Bruce Martin
7b99d1a1b8 update JS deps (#1642) 2020-07-17 12:38:54 -07:00
Bruce Martin
18d0fd78cf fix view stack bug (#1640) 2020-07-16 16:14:52 -07:00
bmccandless
f223d7504e Small fix for handling display versions (#1625)
* Small fix for handling display versions

Making a distinction between __version__ and the version we display in the info panel (displayr_version).
The hosted cellxgene can overwrite the display_version using a plugin.

Improve version handling in the customized assets
2020-07-16 15:11:37 -07:00
Severiano Badajoz
ed23d5dd9d fix truncation edge cases (#1637) 2020-07-16 14:00:57 -07:00
Bruce Martin
c592ff35f6 improve graph loading UI (#1636) 2020-07-16 11:07:06 -07:00
Bruce Martin
2265bfc921 render perf refinements (#1632)
* render performance improvements

* improve render perf

* remove logging

* lint

* improve memoziation
2020-07-16 09:53:46 -07:00
Bruce Martin
17c1145ee4 protect against reference detach (#1634) 2020-07-16 09:53:15 -07:00
Bruce Martin
68cc0ae16c simply state management (#1628)
* simply viewport size state management

* lint
2020-07-15 10:31:42 -07:00
Bruce Martin
1269e188be Redux refactor (#1571)
* refactor categorical controls state

* lint

* fix race condition in tests

* fix typo

* add missing update on subset

* remove obsolete code

* update jest and puppeteer major version; update all minors

* update when label changes

* remove lint from tests; increase timeouts in e2e tests

* initial refactoring to new async annomatrix

* refine error handling

* fix bad merge

* add continuous legend

* lint

* fix memoization in color table creators

* partial implementation of user defined annotations

* add new annotations action creator file

* first pass at user annotations

* additional user annotation bug fixes

* user annotation auto-save

* unit test cleanup

* lint

* refactor into multiple files

* cleanup

* add column GC

* fix several bugs in user annotations

* remove debug code

* no anonymous functions

* undo redo cleanup

* file cleanup

* scatterplot

* performance

* cleanup

* remove old code

* render in parallel with load

* fix race condition

* simply graph rendering

* render throttle DRY

* fix category label order

* fix typo in e2e test setup

* re-fix the e2e test setup

* be more tolerant of races

* anno matrix unit tests

* temp disable reembedding

* pilot port continuous histo to react-async

* name change

* lint

* fix repaint bug

* typo fix

* update snap to match new ids

* world/universe name cleanup

* move annoMatrix to src dir

* use private underscore naming convention

* fix corner case in all selected

* name cleanup

* add layout control

* init edge case

* lint

* port scatterplot

* fix label indexing bug and improve tests

* port category to react-async

* fix user annotation labelling while subset

* select all of prev layout on layout switch

* fix race with crossfilter update

* prettier lint

* fix misleading comment

* fix url composition in loader

* first pass at crossfilter tests

* lint

* lint

* fix typo

* improved error handling for network errors

* fix memoization bug

* add memo

* refactor for performnce

* add missing single-value handling in select exact parser

* small bugs discovered by tests

* lint

* additional crossfilter unit tests

* remove extraneous comment

* add support for automatic category determination

* lint

* fix render bug in category

* take advantage of schema categories guarantee

* lint

* do not clear history when resetting

* enhanced annomatrix gc

* lint

* finish renaming to follow conventions; fix clone race bug

* lint

* add priority based loading to improve initial data load UX

* crossfilter cache perf

* perf tuning

* remove timers

* documentation

* PR review changes

* PR review changes

* more PR review edits

* improve clarity of comment

* more PR review fixes

* port centroidLabels to use react-async

* remove dead code

* pr review updates

* oops, remove logging
2020-07-14 13:53:33 -07:00
Timmy Huang
2b0c4692ba e2e-add-more-logs (#1598) 2020-06-30 21:27:38 -07:00
Bruce Martin
8898a9817c protect against non-integer array indexing (#1595)
* do not assume non-iteger array bracket access will return undefined

* revert to spec
2020-06-29 09:37:59 -07:00
Timmy Huang
b79f09c550 FIX-test-target-closed: remove jestPuppeteer.resetBrowser() (#1592) 2020-06-26 10:02:25 -07:00
Timmy Huang
52a3f8b85a disable-puppeteer-dumpio (#1591) 2020-06-25 19:52:59 -07:00
Timmy Huang
83376627e8 1510-smoke-test (#1548)
* 1510-smoke-test

* config default

* update tests

* update test config

* fix linter errors

* more comments

* address comments

* use npm install in push_tests.yml

* use environment.default.json

* adding docs

* Take care of @mweiden's nits

* Save screenshots in the __tests__/screenshots/ directory

* typo

* docs

* Add chart tests (#1580)

* merge tests

* check if bin creation returned null before rendering charts (#1576)

* check if bin creation returned null before rendering charts

* refactor chart rendering into functions (#1577)

* little fixes from PR

* reintroduce fix to check for null values

* change getAllByClass to return element

* slice instead

* new stackedbar test

* feedback-1573-test (#1579)

* feedback-1573-test

* enable whole test set

* revert tests

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

* tweak test to actually render chart

* include snapshot

* remove async

* fix getAllHistograms

* properly grab id

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

Co-authored-by: Matt Weiden <538456+mweiden@users.noreply.github.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
2020-06-24 11:45:39 -07:00
Severiano Badajoz
9e7ecfa279 check if bin creation returned null before rendering charts (#1576)
* check if bin creation returned null before rendering charts

* refactor chart rendering into functions (#1577)

* little fixes from PR

* reintroduce fix to check for null values

* change getAllByClass to return element

* slice instead

* new stackedbar test

* feedback-1573-test (#1579)

* feedback-1573-test

* enable whole test set

* revert tests

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
2020-06-23 11:59:39 -07:00
Severiano Badajoz
0e28df0bd6 Fix Truncation styling issues (#1558)
* fix color inheritance

* tweak width constants

* update snapshot

* Trigger workflow
2020-06-16 10:48:28 -07:00
Donald Paul Herman
d6a96e9c29 Improve Lasso 'will close' visual feedback. (#1550)
* Decreased the scope of polygonToPath and distance variables.  Added a
new variable for the lasso path color.  Removed the color setting from
handleDragStart, since this is already set in handleDrag.  Added a
closePathColor "#bb2f00" which is the complementary of lasso path color.
When a lasso can close, the color will change from blue to red.

* Fix some linter issues.

* Fixed some linter issues.

* Fixing some linter issues.

* Changed lasso open and closed to BLUE5 and GREEN5 respectively.
2020-06-16 11:48:29 -04:00
Severiano Badajoz
23619010c3 Componentize bar charts (#1557)
* create miniHistogram Component

* use MiniHistogram

* create MiniStackedBar Component

* Use MiniStackedBar

* update graphs on colorAccessor change

* Move bin creation out of miniHistogram

* rename expressionLabel

* breakout stackedbar bin creation

* Trigger workflow

* move components to individual folders

* rename constant
2020-06-15 11:32:55 -07:00
Colin Megill
77ffa0712e If min / max are the same, hide histo + legend, show value (#1554)
* hide legend, histo single value

* display block

* extra check for domain

* Update client/src/components/continuousLegend/index.js

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* readability on variables, use clipped ranges

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
2020-06-11 16:27:02 -04:00
Bruce Martin
bc7a712048 refactor categorical controls state (#1549)
* refactor categorical controls state

* lint

* fix race condition in tests

* fix typo

* add missing update on subset

* remove obsolete code

* update jest and puppeteer major version; update all minors

* update when label changes

* remove lint from tests; increase timeouts in e2e tests

* changes in response to PR review

* lint

* more PR comment changes

* more PR comment fixes

* lint

* more PR comment resolutions
2020-06-10 12:56:38 -07:00
Severiano Badajoz
f063708b33 Add linting rules around ESLint directive comments (#1551)
* add eslint-plugin-eslint-comments and require descriptive configuration

https://eslint.org/docs/user-guide/configuring#using-configuration-comments

* update ESLint

* audit ESLint disables

* update ESLint and related dependencies
2020-06-08 17:31:25 -07:00
Severiano Badajoz
4e96847032 Create Truncation Component (#1500)
* remove ESLint rules

operator-linebreak is no different then default
quotes is overwriting prettier config

* add string-pixel-width dep

* don't lint-staged src, only staged

* add widthMap

* create Truncate component

* refactor in truncate component

* add font load checking

* remove font-family styling

* render Truncate's child instead of creating own component to render

* refactor to use Truncate component

* add span back

* support children

* remove maybeTruncateString

* sub in Truncate component

* add bold prop

* accurately compute largest possible string

* remove logs

* tweak truncation method

* memoize comp function

* explain disable

* fix bugs w/ abs/floor

* tweak widths

* tweak widths

* fix font size

* remove border

* move test-id

* attempt css solution

* Revert "attempt css solution"

This reverts commit aac4d8a6f6.

* CSS solution v2

* remove string-pixel-width

* remove widthsMap

* remove dead code

* remove "data-truncated" as it is always true

* tweak label width

* fix e2e tests

* remove testing string

* e2e annotations tweaks

* correct snapshot

* remove resolves

* check for labels

* add test-id

* format fix

* update snapshot

* fix color

* pull constants out where available
2020-06-05 10:14:42 -07:00
Bruce Martin
2ba4944f5c initial bug fixes and test improvements for the matrix refactor (#1503)
* initial bug fixes and test improvements for the matrix refactor

* lint
2020-06-02 09:47:40 -07:00
Severiano Badajoz
271e7a1e76 Fix prettier related ESLint issues (#1493)
* add quotes

* add prettier dev-dep

* run prettier on src

* add eslint-prettier-plugin to install
2020-05-26 09:33:59 -07:00
Severiano Badajoz
889b582538 ESLint tooling and enforcement(#1492)
* add eslint-prettier

* add lint-staged

* ignore .eslintcache

* remove unused import

* attempt test change

* Revert "attempt test change"

This reverts commit 78d0e31d41.

* attempt to add error

* Revert "attempt to add error"

This reverts commit a5885c0942.

* add error

* create config

* add comment

* tweak glob

* Revert "add error"

This reverts commit 3187522396.

* add python error

* Revert "add python error"

This reverts commit d0b116ed15.

* lint on push + PR

* Revert "add comment"

This reverts commit efa4eb6676.

* add prettier rules to ESLint

* remove lint-diff targets
2020-05-21 14:27:49 -07:00