127 Commits

Author	SHA1	Message	Date
chhylp123	24e5453781	bug fix	2021-05-02 14:16:36 -04:00
chhylp123	9c205c8271	resove tangle by hic	2021-04-30 22:44:48 -04:00
chhylp123	71e91f3fc2	assgin disconnected parts	2021-04-28 20:27:43 -04:00
chhylp123	2fc2268268	phasing improvement	2021-04-27 21:35:49 -04:00
chhylp123	11430d6a3b	r329	2021-04-25 14:50:36 -04:00
chhylp123	7b07e355b7	bug fix for bubble scanning	2021-04-23 20:40:43 -04:00
chhylp123	475ebb8075	keep long range information	2021-04-20 01:29:15 -04:00
chhylp123	39c19618e8	backup hic	2021-04-18 21:57:16 -04:00
chhylp123	efacf8e796	bug fixing	2021-04-16 22:26:28 -04:00
chhylp123	f8ee584291	code clean	2021-04-16 20:28:48 -04:00
chhylp123	1e86e3dc02	best flipping	2021-04-14 18:50:20 -04:00
chhylp123	67c7218264	fix distance bug	2021-04-13 01:18:49 -04:00
chhylp123	36afbce9bc	update unitig distance	2021-04-12 04:54:06 -04:00
chhylp123	7235f6426f	back_up_hic	2021-04-11 10:59:26 -04:00
chhylp123	8f733750c4	variant calling	2021-04-10 21:58:53 -04:00
chhylp123	3218618bb4	keep k_trans	2021-04-08 23:58:12 -04:00
chhylp123	1a6f386823	backup trans_chain	2021-04-04 20:27:19 -04:00
chhylp123	8e75eb5a05	keep l1 trans	2021-04-04 14:00:28 -04:00
chhylp123	ebfc04d253	clean purge_dups	2021-04-03 16:26:58 -04:00
chhylp123	46e899bbae	backup r321	2021-04-01 21:02:57 -04:00
chhylp123	0605aa1961	r317	2021-03-27 02:46:48 -04:00
chhylp123	24a19d7976	more accurate purging	2021-03-26 18:07:30 -04:00
chhylp123	d89a630ff3	update contig flipping	2021-03-25 03:03:19 -04:00
chhylp123	ede6ccef00	fix misassemblies	2021-03-20 18:36:02 -04:00
chhylp123	e6e6dbf7b3	remove unnecessary bin files of Hi-C	2021-03-18 13:44:30 -04:00
chhylp123	98a04c168a	update r313	2021-03-18 05:26:33 -04:00
chhylp123	3b4953521f	trio bug fixed	2021-03-16 02:36:19 -04:00
chhylp123	8e4b98f0a6	bubble label	2021-03-14 03:25:19 -04:00
chhylp123	4c2ce6fc6b	update trans chain	2021-03-10 22:46:50 -05:00
chhylp123	8aa87fdce8	purge_dups for high het	2021-03-08 20:52:11 -05:00
chhylp123	e8b92f7a40	backup for hic	2021-02-18 00:58:25 -05:00
chhylp123	d2bf15eba4	update r311	2021-02-14 13:32:02 -05:00
chhylp123	8855604d99	fix chain bug	2021-02-14 12:45:37 -05:00
chhylp123	02fa015e28	fix memory leak	2021-02-13 23:58:39 -05:00
chhylp123	18086e2c2e	update 0.14-r310	2021-02-13 23:21:45 -05:00
chhylp123	5bb22f701c	debug hic_hits	2021-02-09 18:40:49 -05:00
chhylp123	8467d58ef1	for v0.14	2021-02-09 13:00:23 -05:00
chhylp123	75ce7cd576	for v0.14-hic	2021-01-31 10:34:21 -05:00
chhylp123	a009026e65	fix bug for broken bubbles	2021-01-15 07:33:13 -05:00
chhylp123	88f5b11f04	bubble graph	2021-01-01 04:50:42 -05:00
chhylp123	c545fd84c7	hic bubble	2020-12-29 09:15:44 -05:00
chhylp123	5d506e82c9	phasing	2020-12-28 03:35:17 -05:00
chhylp123	53a655d802	init partition	2020-12-26 19:01:24 -05:00
chhylp123	f3e390eee8	for hic	2020-12-17 02:53:31 -05:00
chhylp123	ab073aa1fc	hic first	2020-11-14 23:35:32 -05:00
chhylp123	0cc02035c5	HiC full index	2020-10-26 11:01:48 -04:00
chhylp123	b2b4624cea	rerelease v0.13	2020-10-22 14:24:59 -04:00
chhylp123	91d4915da7	release v0.13	2020-10-21 21:57:43 -04:00
chhylp123	04f94514ee	fix circle	2020-10-19 19:51:17 -04:00
chhylp123	b1f844801a	fix c->l bug	2020-10-19 16:39:53 -04:00