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mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-20 11:28:50 +08:00
Code Issues Packages Projects Releases Wiki Activity
465 Commits 11 Branches 54 Tags
9c79bdfe7f336cc2a4a4e7d2edfd2e596a392d67
Commit Graph
95 Commits
Author SHA1 Message Date
Heng Li 293f4b6b58 to replace get_new_candidates(); UNFINISHED! 2020-03-27 11:21:08 -04:00
Heng Li 10ed8b36ec implemented ha_pt_get() 2020-03-26 23:00:00 -04:00
Heng Li 79bc553da6 removed hifiasm hash table index 2020-03-26 16:10:01 -04:00
Heng Li 0dd927bdce write to hifiasm read store 2020-03-26 14:23:17 -04:00
Heng Li 716713685c renamed files for code cleanup 2020-03-25 19:59:17 -04:00
Heng Li 64edb06e08 NOT WORKING!!! added all k-mer counter 2020-03-24 12:29:46 -04:00
Heng Li 59a9d62df9 NOT WORKING!!! backup only 2020-03-24 00:44:56 -04:00
chhylp123 c72d419711 for hifiasm 3.0 2020-03-22 16:54:32 -04:00
chhylp123 6246132702 update for 0.2.0 2020-02-07 14:52:14 -05:00
Haoyu Cheng d8416873f3 upadate man-page and readme 2020-01-04 11:54:08 +08:00
Heng Li 3a61b1b0b0 changed the output file names 2019-12-30 12:01:54 -05:00
Haoyu Cheng 1523d10291 README 2019-12-28 04:45:53 -05:00
Heng Li 03c8899a34 fixed clang warnings 2019-12-26 09:40:35 -05:00
Haoyu Cheng 4ac9907e49 clean code 2019-12-26 02:26:24 -05:00
Haoyu Cheng 1ead2d3081 M50 improved 2019-12-23 09:37:26 -05:00
Haoyu Cheng 06556e4a9b backup without bundaries processing 2019-12-17 16:58:20 -05:00
Haoyu Cheng f1cde019a9 for break points at chr11 2019-12-12 00:31:24 -05:00
Haoyu Cheng 09603432e5 fix bugs for overlaps of different length 2019-12-09 17:07:11 -05:00
Haoyu Cheng 3425bd020b more cutting methods 2019-11-20 15:43:44 -05:00
Haoyu Cheng ada03ea388 final DP-based assembly 2019-11-13 20:18:11 -05:00
Haoyu Cheng b57923d050 2019_9_5 2019-09-05 11:47:54 -04:00
Haoyu Cheng d5327fe9ee phasing 2019-09-02 10:30:14 -04:00
Haoyu Cheng 3c0c201cdf improve speed 2019-08-26 02:22:20 -04:00
Haoyu Cheng 6802d873cf fix insertion bug 2019-07-18 03:02:58 -04:00
Haoyu Cheng ad8a4c9c65 full error correction 2019-07-14 21:13:50 -04:00
Haoyu Cheng f508762557 resure alignment 2019-07-12 10:18:25 -04:00
Haoyu Cheng 3d88530385 debug 2019-07-09 22:15:58 -04:00
Haoyu Cheng 4eddb02dbd prefilter 2019-07-09 15:11:04 -04:00
Haoyu Cheng 1892b4d2db prefilter 2019-07-08 01:06:36 -04:00
Haoyu Cheng 87873d6323 edit distance based error correction 2019-07-07 03:44:59 -04:00
Haoyu Cheng b553f3ac5e POA 2019-07-01 09:08:25 -04:00
Haoyu Cheng 30161f1544 overlap 2019-06-23 23:28:28 -04:00
Haoyu Cheng e3924b5c08 Change stupid merge function 2019-05-19 05:02:28 -04:00
Haoyu Cheng 63509bcb7f Accelerate overlap merge 2019-05-18 11:36:42 -04:00
Haoyu Cheng ddd96d8456 Merge overlap 2019-05-18 01:03:24 -04:00
Haoyu Cheng 87a6091ffe Fix bug 2019-05-17 00:54:04 -04:00
Haoyu Cheng 7cebaf271b Fix bug 2019-05-17 00:52:10 -04:00
Haoyu Cheng 17553e0a42 S/L index&reads 2019-05-16 21:14:50 -04:00
Haoyu Cheng 3c5799aa1b Reduce memory requirement 2019-05-16 00:22:20 -04:00
Haoyu Cheng 45355a1103 Update position hash table 2019-05-14 17:02:03 -04:00
Haoyu Cheng df18b5af76 Update modimers 2019-05-12 04:03:54 -04:00
Haoyu Cheng 9302fc6058 Finish multiple thread counting 2019-05-12 02:16:20 -04:00
Haoyu Cheng 94bd75e576 Multiple threads reading 2019-05-11 00:19:16 -04:00
Haoyu Cheng eee68408be Using klib 2019-05-10 16:14:01 -04:00
Haoyu Cheng 0b209dd1e9 Input reads 2019-05-10 00:11:19 -04:00