140 Commits

Author	SHA1	Message	Date
chhylp123	9dc530cbfb	low hamming for sampels with low het rate	2021-06-09 20:10:50 -04:00
chhylp123	ca67e7a9b3	rollback	2021-05-31 18:16:20 -04:00
chhylp123	aa164949f2	backup phasing	2021-05-31 04:19:05 -04:00
chhylp123	e774a83be2	debug mbg	2021-05-30 09:02:25 -04:00
chhylp123	a39f01f4d8	haplotype popping	2021-05-24 19:43:50 -04:00
chhylp123	46c0157f79	new ovlp collect	2021-05-22 10:47:58 -04:00
chhylp123	626787ab8a	complex cleaning	2021-05-20 17:03:18 -04:00
chhylp123	5c1680e998	fix missed ug when bubble popping	2021-05-19 10:16:23 -04:00
chhylp123	b12e008416	new somatic variant popping	2021-05-19 09:52:40 -04:00
chhylp123	be8e1e3117	sc debug	2021-05-17 00:12:41 -04:00
chhylp123	4105dd360e	correction	2021-05-11 13:01:06 -04:00
chhylp123	7918396d21	collect contig alignment + renew_utg bug fixed	2021-05-09 17:47:50 -04:00
chhylp123	9ea4f6917f	resolve centromere	2021-05-06 07:59:51 -04:00
chhylp123	24e5453781	bug fix	2021-05-02 14:16:36 -04:00
chhylp123	9c205c8271	resove tangle by hic	2021-04-30 22:44:48 -04:00
chhylp123	71e91f3fc2	assgin disconnected parts	2021-04-28 20:27:43 -04:00
chhylp123	2fc2268268	phasing improvement	2021-04-27 21:35:49 -04:00
chhylp123	11430d6a3b	r329	2021-04-25 14:50:36 -04:00
chhylp123	7b07e355b7	bug fix for bubble scanning	2021-04-23 20:40:43 -04:00
chhylp123	475ebb8075	keep long range information	2021-04-20 01:29:15 -04:00
chhylp123	39c19618e8	backup hic	2021-04-18 21:57:16 -04:00
chhylp123	efacf8e796	bug fixing	2021-04-16 22:26:28 -04:00
chhylp123	f8ee584291	code clean	2021-04-16 20:28:48 -04:00
chhylp123	1e86e3dc02	best flipping	2021-04-14 18:50:20 -04:00
chhylp123	67c7218264	fix distance bug	2021-04-13 01:18:49 -04:00
chhylp123	36afbce9bc	update unitig distance	2021-04-12 04:54:06 -04:00
chhylp123	7235f6426f	back_up_hic	2021-04-11 10:59:26 -04:00
chhylp123	8f733750c4	variant calling	2021-04-10 21:58:53 -04:00
chhylp123	3218618bb4	keep k_trans	2021-04-08 23:58:12 -04:00
chhylp123	1a6f386823	backup trans_chain	2021-04-04 20:27:19 -04:00
chhylp123	8e75eb5a05	keep l1 trans	2021-04-04 14:00:28 -04:00
chhylp123	ebfc04d253	clean purge_dups	2021-04-03 16:26:58 -04:00
chhylp123	46e899bbae	backup r321	2021-04-01 21:02:57 -04:00
chhylp123	0605aa1961	r317	2021-03-27 02:46:48 -04:00
chhylp123	24a19d7976	more accurate purging	2021-03-26 18:07:30 -04:00
chhylp123	d89a630ff3	update contig flipping	2021-03-25 03:03:19 -04:00
chhylp123	ede6ccef00	fix misassemblies	2021-03-20 18:36:02 -04:00
chhylp123	e6e6dbf7b3	remove unnecessary bin files of Hi-C	2021-03-18 13:44:30 -04:00
chhylp123	98a04c168a	update r313	2021-03-18 05:26:33 -04:00
chhylp123	3b4953521f	trio bug fixed	2021-03-16 02:36:19 -04:00
chhylp123	8e4b98f0a6	bubble label	2021-03-14 03:25:19 -04:00
chhylp123	4c2ce6fc6b	update trans chain	2021-03-10 22:46:50 -05:00
chhylp123	8aa87fdce8	purge_dups for high het	2021-03-08 20:52:11 -05:00
chhylp123	e8b92f7a40	backup for hic	2021-02-18 00:58:25 -05:00
chhylp123	d2bf15eba4	update r311	2021-02-14 13:32:02 -05:00
chhylp123	8855604d99	fix chain bug	2021-02-14 12:45:37 -05:00
chhylp123	02fa015e28	fix memory leak	2021-02-13 23:58:39 -05:00
chhylp123	18086e2c2e	update 0.14-r310	2021-02-13 23:21:45 -05:00
chhylp123	5bb22f701c	debug hic_hits	2021-02-09 18:40:49 -05:00
chhylp123	8467d58ef1	for v0.14	2021-02-09 13:00:23 -05:00