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mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-30 02:48:11 +08:00
Code Issues Packages Projects Releases Wiki Activity
656 Commits 11 Branches 54 Tags
a137a6b06fface074f9dceb29b6c5c7a25dd4dec
Commit Graph
270 Commits
Author SHA1 Message Date
chhylp123 a137a6b06f r878 2026-03-28 11:02:52 -04:00
chhylp123 e53fc786bd fix slow running time vs r726 2026-03-27 15:37:44 -04:00
chhylp123 aa4d12b1c6 simd version 0 2026-03-24 17:54:36 -04:00
chhylp123 9a2884f518 backup avx 2026-03-20 16:06:06 -04:00
chhylp123 c0478830e6 err_estimate 2026-03-01 08:51:53 -05:00
chhylp123 2fa4ef224f updating final overlapping 2026-02-17 18:07:49 -05:00
chhylp123 86311effb9 running time bug fixed 2026-02-16 10:46:28 -05:00
chhylp123 53e1b150c3 bug fixed for memory leak 2026-02-12 16:47:32 -05:00
chhylp123 67877deed3 r852 -> hybrid correction 2026-02-11 16:38:57 -05:00
chhylp123 d6ba102d42 r852 -> hybrid correction 2026-02-11 16:38:27 -05:00
chhylp123 ec9a8b222d add new options for ont assembly 2025-03-18 12:29:48 -04:00
chhylp123 b3b18ab1d0 r721 2025-03-14 01:40:21 -04:00
chhylp123 a96191560e eliminate SVs 2025-03-10 16:09:02 -04:00
chhylp123 4733ef5011 update readme for ont 2025-01-31 20:27:22 -05:00
chhylp123 2c77b3c87e ont overlapping 2024-12-21 03:17:17 -05:00
chhylp123 3067771783 update for low coverge data 2024-12-16 06:25:31 -05:00
chhylp123 4889f1c6d8 fix high-coverage issue for ONT 2024-12-07 20:02:57 -05:00
chhylp123 dbdef7ff63 fix Print_H 2024-12-06 05:29:19 -05:00
chhylp123 184eb0a9fe fix the memory issue 2024-12-06 05:17:30 -05:00
chhylp123 676385cf8e ont simplex support 2024-11-27 13:27:13 -05:00
chhylp123 80fa5ed436 ONT EC 2024-11-12 23:53:29 -05:00
chhylp123 6de4e14782 update before fly HPC 2024-10-29 14:59:52 -04:00
chhylp123 ade800990e update for reference read hpc 2024-10-27 13:22:06 -04:00
chhylp123 49dd83df2a fix memory issue 2024-10-13 18:47:05 -04:00
chhylp123 e8b18560a5 0.20.0-r631 2024-10-09 17:09:10 -04:00
chhylp123 70fd9a0b1f keeping more telomeres 2024-05-06 04:02:20 -04:00
chhylp123 73dd5eeb5b gen_telo_end_t 2024-04-28 15:11:21 -04:00
chhylp123 358b090e20 fix scaf bugs 2024-04-27 07:58:49 -04:00
chhylp123 61ceb3a4e1 fix bubble issue 2023-11-06 00:09:38 -05:00
chhylp123 4ca8951f9d fix bug for gen_contain_consensus_chain 2023-10-22 13:23:27 -04:00
chhylp123 281ae6ba89 add scaffolding 2023-10-10 12:40:29 -04:00
chhylp123 c7685e6f19 checkpoint for scaffolding 2023-09-15 12:58:34 -04:00
chhylp123 858b95a3bb disable multiple assertions 2023-08-17 19:58:35 -04:00
chhylp123 64091a76a5 fix filter_short_ulalignments 2023-07-19 19:11:37 -04:00
chhylp123 adeb2c603d trio-dual/bug for hic phasing 2023-05-31 14:54:50 -04:00
chhylp123 44475e2665 remove ksw2 from makefile 2023-05-12 20:57:11 -04:00
chhylp123 2c18ec30da fix memory leak of print_utg 2023-05-12 11:31:34 -04:00
chhylp123 18b649aadb fixed missing/false duplication for diploid asm 2023-04-17 19:58:00 -04:00
chhylp123 0efcc14499 fix chain spliting bug 2023-04-14 16:43:41 -04:00
chhylp123 84e642d20d fix bubble on-the-fly 2023-04-13 10:16:14 -04:00
chhylp123 5df5892f33 update for rescuing missing contigs 2023-04-06 23:14:41 -04:00
chhylp123 503cd0f7cc 0.19.2->0.19.3 2023-03-22 12:25:39 -04:00
chhylp123 86b7dd424a avoid misassemblies; better polyploidy graph 2023-03-22 12:23:53 -04:00
chhylp123 d4773a497f disable postjoin for the ul assembly 2023-03-13 15:43:22 -04:00
chhylp123 f67faa9c34 path-max and path-min to avoid misassemblies 2023-03-13 11:13:57 -04:00
chhylp123 3407c7029e coverage adjustment for polyploidy 2023-03-12 17:02:29 -04:00
chhylp123 b533067835 enable dbg-ovec 2023-03-10 23:30:24 -05:00
chhylp123 384b721d84 clean output 2023-03-10 15:46:23 -05:00
chhylp123 8b79a3f22e disable function for tangles with low-coverage ul 2023-03-10 15:34:10 -05:00
chhylp123 af4be8ca1a disable integer correction; disable contain dedup 2023-03-10 09:12:07 -05:00