21 Commits

Include renames

Author	SHA1	Message	Date
chhylp123	809ca18dda	r373	2021-09-10 17:17:44 -04:00
chhylp123	37b07e4d33	better seeding	2021-08-22 09:53:34 -04:00
chhylp123	a39f01f4d8	haplotype popping	2021-05-24 19:43:50 -04:00
chhylp123	24e5453781	bug fix	2021-05-02 14:16:36 -04:00
chhylp123	7b07e355b7	bug fix for bubble scanning	2021-04-23 20:40:43 -04:00
chhylp123	67c7218264	fix distance bug	2021-04-13 01:18:49 -04:00
chhylp123	3218618bb4	keep k_trans	2021-04-08 23:58:12 -04:00
chhylp123	8e75eb5a05	keep l1 trans	2021-04-04 14:00:28 -04:00
chhylp123	ebfc04d253	clean purge_dups	2021-04-03 16:26:58 -04:00
chhylp123	46e899bbae	backup r321	2021-04-01 21:02:57 -04:00
chhylp123	d89a630ff3	update contig flipping	2021-03-25 03:03:19 -04:00
chhylp123	8e4b98f0a6	bubble label	2021-03-14 03:25:19 -04:00
chhylp123	4c2ce6fc6b	update trans chain	2021-03-10 22:46:50 -05:00
chhylp123	8aa87fdce8	purge_dups for high het	2021-03-08 20:52:11 -05:00
chhylp123	f3e390eee8	for hic	2020-12-17 02:53:31 -05:00
chhylp123	fda858f9e7	update coverage	2020-07-13 22:34:26 -04:00
chhylp123	c01b593d7c	using coverage	2020-07-12 16:03:01 -04:00
chhylp123	2e56ef7db5	apply coverage to purge_dups	2020-07-06 10:02:03 -04:00
chhylp123	7f6725ead3	expose purge_dups	2020-04-18 00:45:47 -04:00
chhylp123	a288415111	bug fixing for purge_dup	2020-04-08 16:55:04 -04:00
chhylp123	ac3fcc339a	for purge_dup	2020-04-05 11:10:56 -04:00