 Heng Li
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f6ea45b58a
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r251: always keep the best hits
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2020-05-08 00:40:53 -04:00 |
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Heng Li
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e544360043
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r250: fixed a bug in selecting top chains
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2020-05-07 14:49:49 -04:00 |
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Heng Li
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3364a29b87
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r249: make max overlap error rate CLI options
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2020-05-06 01:16:50 -04:00 |
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Heng Li
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331e437c72
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r248: contained reads not handled properly
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2020-05-03 00:27:53 -04:00 |
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chhylp123
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7f6725ead3
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expose purge_dups
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2020-04-18 00:45:47 -04:00 |
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Heng Li
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85c57fd087
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r246: made purge_dups optional for trio binning
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2020-04-15 23:57:18 -04:00 |
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chhylp123
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57e979ca17
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update for v0.5.0
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2020-04-14 00:10:58 -04:00 |
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Heng Li
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a06ee39433
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r244: use 3 rounds of error correction by default
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2020-04-13 19:51:15 -04:00 |
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Heng Li
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8907e9c64f
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r243: Merge branch 'master' into dev-lh3
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2020-04-13 15:18:21 -04:00 |
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Heng Li
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946a0f4115
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r238: got rid of LIS chaining
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2020-04-13 14:44:10 -04:00 |
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Heng Li
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b333addb6c
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r237: fall back to DP chaining more often
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2020-04-13 08:39:05 -04:00 |
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chhylp123
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b93baa3cbd
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update README
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2020-04-12 20:46:54 -04:00 |
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Heng Li
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cc166c8ff5
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r235: clarified option -f
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2020-04-12 19:42:02 -04:00 |
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Heng Li
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cdd5f3e4e0
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r234: fixed a bug for -r of an odder number
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2020-04-12 19:25:53 -04:00 |
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Heng Li
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2c4de3a326
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r230: the first anchor score was not adjusted
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2020-04-12 10:39:42 -04:00 |
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Heng Li
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75a89c214d
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r229: LIS score is still not exactly right
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2020-04-12 10:19:28 -04:00 |
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Heng Li
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22b681b830
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r228: resolved a compiler warning
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2020-04-12 09:56:50 -04:00 |
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Heng Li
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4d7600361c
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r226b: prefer unique anchors
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2020-04-11 22:28:21 -04:00 |
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Heng Li
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c4397a9400
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r226: more careful about ma_hit_t_alloc memory
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2020-04-11 22:05:07 -04:00 |
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Heng Li
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e6b5b666a2
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r224: versioning
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2020-04-11 00:14:33 -04:00 |
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Heng Li
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c710c6ea48
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r221: sync with hifiasm parameter
Probably has no practical effect
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2020-04-10 21:49:01 -04:00 |
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Heng Li
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c37ea00d6a
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r220: resumed versioning
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2020-04-10 19:12:32 -04:00 |
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Heng Li
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22b2e1e9e1
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r217: fixed a bug in LIS chaining score
Also fall back to DP chaining more often
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2020-04-10 13:25:25 -04:00 |
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Heng Li
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71328f7423
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r215: binning with external list (NOT TESTED!!)
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2020-04-10 01:06:43 -04:00 |
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Heng Li
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f32bfc904a
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r215: prepare for list-based binning
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2020-04-10 00:12:19 -04:00 |
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Heng Li
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7a35bd7fcc
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r213: renamed trio binning output files
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2020-04-09 20:40:01 -04:00 |
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Heng Li
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c3f032da37
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r212: LIS chaining was not working
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2020-04-09 10:43:37 -04:00 |
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Heng Li
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c41aae0630
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r211: added --write-paf/--write-ec/--skip-triobin
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2020-04-08 22:32:54 -04:00 |
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Heng Li
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8efcdefcaf
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r207: multiple input files were not working
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2020-04-07 12:40:10 -04:00 |
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Heng Li
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a79fd0f360
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r206: apply trio binning when loading from binary
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2020-04-06 16:58:29 -04:00 |
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Heng Li
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1bbca54d8d
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r205: resume versioning
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2020-04-06 09:59:43 -04:00 |
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Heng Li
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adbc65feda
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r201: automatically adjust -N
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2020-04-05 22:43:01 -04:00 |
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Heng Li
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3773610532
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r200: reworked multi-thread for better efficiency
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2020-04-05 16:18:14 -04:00 |
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Heng Li
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46f83e152d
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r199: renamed pre.ovlp.bin to pre.ec.bin
Also updated the Makefile dependencies
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2020-04-05 13:45:50 -04:00 |
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Heng Li
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0f1994fc1f
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r198: made VERBOSE_GFA a CL option --dbg-gfa
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2020-04-05 13:01:03 -04:00 |
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Heng Li
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31356f9e02
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r197: added an assertion test/suppressed warnings
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2020-04-05 12:22:28 -04:00 |
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Heng Li
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16a3d58dc9
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r196: fixed a compiling error
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2020-04-05 12:14:20 -04:00 |
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Heng Li
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5917aa2f36
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Merge branch 'chain-tune' into merge2
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2020-04-05 12:07:13 -04:00 |
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Heng Li
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f0c53e9948
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r192: estimate buffer memory
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2020-04-05 11:17:12 -04:00 |
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chhylp123
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ac3fcc339a
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for purge_dup
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2020-04-05 11:10:56 -04:00 |
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Heng Li
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8c27dbb52f
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r191: changed the default to -N400 -k51 -w51
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2020-04-04 12:55:19 -04:00 |
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Heng Li
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4e3c15ec83
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r190: fixed an if_exact() bug
caused by reverse complement again
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2020-04-04 00:51:38 -04:00 |
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Heng Li
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dbe66d259d
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r189: print statistics
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2020-04-04 00:14:53 -04:00 |
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Heng Li
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69c32066d4
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r188: reduced duplicated code
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2020-04-03 23:53:43 -04:00 |
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Heng Li
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18b69f1a72
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r187: reversed round in clear_opt()
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2020-04-03 22:19:55 -04:00 |
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Heng Li
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76de054331
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r186: fixed memory leaks when loading from disk
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2020-04-03 20:35:47 -04:00 |
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Heng Li
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992322f8e3
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r185: fixed a few more memory leaks
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2020-04-03 20:14:20 -04:00 |
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Heng Li
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6f4d0debe4
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r184: fixed a memory leak in POA
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2020-04-03 14:10:40 -04:00 |
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Heng Li
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d529dcea3f
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r183: reorganized the major workflow
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2020-04-03 13:34:07 -04:00 |
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Heng Li
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ffba3ce0ef
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r182: explain -N
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2020-04-03 10:42:09 -04:00 |
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