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527 Commits 11 Branches 54 Tags
fc76af1285d692cceca6c83641b183243e7f3b9c
Commit Graph
183 Commits
Author SHA1 Message Date
chhylp123 fc76af1285 fixed gap filling with UL 2022-11-25 11:46:37 -05:00
chhylp123 152bae2dfb fix utg el bug 2022-11-17 12:18:40 -05:00
chhylp123 9831afaf26 code clean 2022-11-17 09:31:56 -05:00
chhylp123 2c7b164f11 tmp cache 2022-11-10 19:37:52 -05:00
chhylp123 46acc8a2f6 version with wrong realignment 2022-11-07 02:35:26 -05:00
chhylp123 612c1ab712 cuttoff before debugging 2022-11-05 09:03:23 -04:00
chhylp123 e66c003b65 cleaner graph 2022-11-01 21:44:13 -04:00
chhylp123 f4b6223fde cutoff-r426-avoid-tip 2022-10-31 15:18:52 -04:00
chhylp123 249bee7304 done contain clean 2022-10-27 17:05:46 -04:00
chhylp123 df3e0eeaa3 read extract 2022-10-19 13:23:25 -04:00
chhylp123 89e0d1aafa UL graph with graph cleaning 2022-08-02 15:48:16 -04:00
chhylp123 33afa25398 UL graph done 2022-07-24 18:13:16 -04:00
chhylp123 98bb89227e integer correction 2022-06-07 16:56:28 -04:00
chhylp123 74ad15846e small bugs fixed 2022-05-14 22:07:55 -04:00
chhylp123 8a2bb0b112 memory debugging 2022-05-04 20:22:50 -04:00
chhylp123 e8399b18f1 fixed duplicated chaining issue 2022-05-03 17:35:43 -04:00
chhylp123 8138941a26 new realignment 2022-05-03 00:59:24 -04:00
chhylp123 fdf24d5589 fix memory bug/logic bug 2022-05-01 00:37:32 -04:00
chhylp123 9c79bdfe7f UL_gdp 2022-04-13 16:15:03 -04:00
chhylp123 95eb2de2b9 roughly right chaining 2022-03-25 00:29:58 -04:00
chhylp123 d3b9de4120 new gchain 2022-03-16 01:13:27 -04:00
chhylp123 9c6a3607d1 intergration correctio 2022-03-01 20:25:53 -05:00
chhylp123 0ce5a7ba5b integration/print het sites 2022-01-17 18:29:48 -05:00
chhylp123 dbc72b8c2d has bug multiple threads 2021-12-28 21:48:41 -05:00
chhylp123 8a0ec3d575 change ug extraction 2021-12-12 20:59:48 -05:00
chhylp123 9ec286e64e new ul 2021-12-11 14:55:36 -05:00
chhylp123 b640289b19 better read phasing 2021-12-07 22:47:52 -05:00
chhylp123 1e2a9518e5 print dup log 2021-11-29 15:11:02 -05:00
chhylp123 763634e1a9 kpt_dup 2021-11-28 19:35:32 -05:00
chhylp123 26aacdcc2c correct gchains 2021-10-14 15:33:16 -04:00
chhylp123 cb320b88f3 debug ul 2021-10-10 13:37:32 -04:00
chhylp123 7dd4a848b9 debug graph 2021-09-26 13:51:13 -04:00
chhylp123 809ca18dda r373 2021-09-10 17:17:44 -04:00
chhylp123 37b07e4d33 better seeding 2021-08-22 09:53:34 -04:00
chhylp123 bfff640a82 dp opt 2021-08-12 11:16:10 -04:00
chhylp123 3c8a933b8a Merge remote-tracking branch 'origin/dev-lh3' 2021-07-27 19:50:29 -04:00
chhylp123 b14f894160 seperate purgeing and hom peak 2021-07-25 11:23:06 -04:00
chhylp123 62b7418257 update 0.15.5 2021-07-22 00:59:52 -04:00
chhylp123 a531a4cbda debugging for huge datasets 2021-06-27 07:48:29 -04:00
chhylp123 5b0a0c85ef ovlp filter 2021-06-13 17:35:09 -04:00
chhylp123 9dc530cbfb low hamming for sampels with low het rate 2021-06-09 20:10:50 -04:00
chhylp123 ca67e7a9b3 rollback 2021-05-31 18:16:20 -04:00
chhylp123 aa164949f2 backup phasing 2021-05-31 04:19:05 -04:00
chhylp123 e774a83be2 debug mbg 2021-05-30 09:02:25 -04:00
chhylp123 a39f01f4d8 haplotype popping 2021-05-24 19:43:50 -04:00
chhylp123 46c0157f79 new ovlp collect 2021-05-22 10:47:58 -04:00
chhylp123 626787ab8a complex cleaning 2021-05-20 17:03:18 -04:00
chhylp123 5c1680e998 fix missed ug when bubble popping 2021-05-19 10:16:23 -04:00
chhylp123 b12e008416 new somatic variant popping 2021-05-19 09:52:40 -04:00
chhylp123 be8e1e3117 sc debug 2021-05-17 00:12:41 -04:00