57 Commits

Author	SHA1	Message	Date
chhylp123	9831afaf26	code clean	2022-11-17 09:31:56 -05:00
chhylp123	809ca18dda	r373	2021-09-10 17:17:44 -04:00
chhylp123	e230b3a55f	0.16.0 release	2021-08-22 21:58:00 -04:00
chhylp123	37b07e4d33	better seeding	2021-08-22 09:53:34 -04:00
chhylp123	321acb2d8a	update for r350	2021-07-26 00:16:00 -04:00
chhylp123	b14f894160	seperate purgeing and hom peak	2021-07-25 11:23:06 -04:00
chhylp123	a39f01f4d8	haplotype popping	2021-05-24 19:43:50 -04:00
chhylp123	03adce6202	k-mer idx for par	2021-05-06 21:31:40 -04:00
chhylp123	9ea4f6917f	resolve centromere	2021-05-06 07:59:51 -04:00
chhylp123	24e5453781	bug fix	2021-05-02 14:16:36 -04:00
chhylp123	e52e897113	clean code	2021-04-24 00:17:08 -04:00
chhylp123	7b07e355b7	bug fix for bubble scanning	2021-04-23 20:40:43 -04:00
chhylp123	278efaa876	block phasing	2021-04-21 10:58:58 -04:00
chhylp123	f8ee584291	code clean	2021-04-16 20:28:48 -04:00
chhylp123	1e86e3dc02	best flipping	2021-04-14 18:50:20 -04:00
chhylp123	67c7218264	fix distance bug	2021-04-13 01:18:49 -04:00
chhylp123	36afbce9bc	update unitig distance	2021-04-12 04:54:06 -04:00
chhylp123	7235f6426f	back_up_hic	2021-04-11 10:59:26 -04:00
chhylp123	8f733750c4	variant calling	2021-04-10 21:58:53 -04:00
chhylp123	3218618bb4	keep k_trans	2021-04-08 23:58:12 -04:00
chhylp123	1a6f386823	backup trans_chain	2021-04-04 20:27:19 -04:00
chhylp123	8e75eb5a05	keep l1 trans	2021-04-04 14:00:28 -04:00
chhylp123	ebfc04d253	clean purge_dups	2021-04-03 16:26:58 -04:00
chhylp123	46e899bbae	backup r321	2021-04-01 21:02:57 -04:00
chhylp123	0605aa1961	r317	2021-03-27 02:46:48 -04:00
chhylp123	24a19d7976	more accurate purging	2021-03-26 18:07:30 -04:00
chhylp123	d89a630ff3	update contig flipping	2021-03-25 03:03:19 -04:00
chhylp123	98a04c168a	update r313	2021-03-18 05:26:33 -04:00
chhylp123	8e4b98f0a6	bubble label	2021-03-14 03:25:19 -04:00
chhylp123	4c2ce6fc6b	update trans chain	2021-03-10 22:46:50 -05:00
chhylp123	8aa87fdce8	purge_dups for high het	2021-03-08 20:52:11 -05:00
chhylp123	d2ca12604b	update r312	2021-02-14 14:17:43 -05:00
chhylp123	d2bf15eba4	update r311	2021-02-14 13:32:02 -05:00
chhylp123	c47a1df4b0	fix chain bug	2021-02-14 12:47:51 -05:00
chhylp123	8855604d99	fix chain bug	2021-02-14 12:45:37 -05:00
chhylp123	8467d58ef1	for v0.14	2021-02-09 13:00:23 -05:00
chhylp123	88f5b11f04	bubble graph	2021-01-01 04:50:42 -05:00
chhylp123	c545fd84c7	hic bubble	2020-12-29 09:15:44 -05:00
chhylp123	53a655d802	init partition	2020-12-26 19:01:24 -05:00
chhylp123	f3e390eee8	for hic	2020-12-17 02:53:31 -05:00
chhylp123	fda858f9e7	update coverage	2020-07-13 22:34:26 -04:00
chhylp123	c01b593d7c	using coverage	2020-07-12 16:03:01 -04:00
chhylp123	a25c37ed89	update k-mer peaks	2020-07-07 13:20:25 -04:00
chhylp123	2e56ef7db5	apply coverage to purge_dups	2020-07-06 10:02:03 -04:00
chhylp123	7f6725ead3	expose purge_dups	2020-04-18 00:45:47 -04:00
Heng Li	2d985569f1	Merge branch 'master' into dev-lh3	2020-04-12 18:57:42 -04:00
chhylp123	57b16e9e1f	fix warning	2020-04-12 17:46:30 -04:00
Heng Li	c4397a9400	r226: more careful about ma_hit_t_alloc memory	2020-04-11 22:05:07 -04:00
chhylp123	20c6c1d2e6	update trio-binning	2020-04-10 23:32:15 -04:00
chhylp123	943b6947cb	update purge_dup by LIS	2020-04-10 13:58:36 -04:00