Charlotte Weaver
489a2dd5db
Add flask-caching to requirements
2018-08-01 16:29:38 -07:00
Charlotte Weaver
0a36fac142
10 day cache (down from 1000)
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I can expect a scientist to leave this running over the weekend on their laptop and still expect fast results. If someone leaves it running for a few years the data can probably be safely recalculated.
2018-08-01 15:48:56 -07:00
Charlotte Weaver
69fca7ea8b
Using flask_caching instead
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More recent module, same API
2018-08-01 15:46:04 -07:00
Charlotte Weaver
7642251d44
Add simple cache to backend
2018-08-01 13:32:04 -07:00
Charlotte Weaver
d77accc858
Update travis for CLI
2018-07-20 13:15:17 -07:00
Charlotte Weaver
83e7685f57
Update readme for CLI
2018-07-20 11:47:42 -07:00
Charlotte Weaver
de5e0f4ea7
Address PR review issues
2018-07-20 11:43:31 -07:00
Charlotte Weaver
9c72f2c2d5
Updating travis file to match new cli
2018-07-19 17:23:30 -07:00
Charlotte Weaver
2c7a11ab80
Added cli command for run
2018-07-19 17:21:28 -07:00
Charlotte Weaver
45f61d87d7
Initial CLI
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added basic cli for running
2018-07-18 21:45:07 -07:00
Charlotte Weaver
71d1cd250c
Merge pull request #119 from chanzuckerberg/csweaver/travis
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Setup travis integration
2018-07-18 14:14:13 -07:00
Charlotte Weaver
558e8f522a
Style for travis build files
2018-07-18 14:07:04 -07:00
Charlotte Weaver
895cfcebe0
Added initial travis config file
2018-07-18 10:21:24 -07:00
Charlotte Weaver
cd7c06c822
Merge pull request #120 from chanzuckerberg/csweaver/packaging-improvements
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Csweaver/packaging improvements
2018-07-17 16:25:31 -07:00
Charlotte Weaver
8b0d7d5cf6
Clarify install docs for python3 and venvs
2018-07-17 16:03:33 -07:00
Charlotte Weaver
28d341cf1c
Fix default path for dataset
2018-07-17 16:03:06 -07:00
Charlotte Weaver
59022d7a9c
Merge pull request #117 from chanzuckerberg/csweaver/tests
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Csweaver/tests
2018-07-17 13:29:48 -07:00
Charlotte Weaver
fdaaaf69a2
use unittest assert methods instead of assert
2018-07-17 11:01:38 -07:00
Charlotte Weaver
6961b64d87
Updated readme for python packaged version
2018-07-16 14:20:50 -07:00
Charlotte Weaver
a5423a6911
Adding minor tests to scanpy calculation code
2018-07-16 11:48:53 -07:00
Charlotte Weaver
05b9a6833d
Add tests for scanpy engine
2018-07-16 11:48:53 -07:00
Charlotte Weaver
b8f501a46c
Move to running tests after installing
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to avoid the sys.path.insert
2018-07-16 11:48:53 -07:00
Charlotte Weaver
b6f253e843
Initial packaging working
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pip install works if client files are built and moved manually
2018-07-16 11:48:53 -07:00
Charlotte Weaver
851ddde130
Merge pull request #116 from chanzuckerberg/csweaver/packaging
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Csweaver/packaging
2018-07-16 11:44:56 -07:00
Charlotte Weaver
2e1da27a31
Merge branch 'webgl-pause'
2018-07-16 11:11:23 -07:00
Charlotte Weaver
d375c48b6a
Merge branch 'master' into webgl-pause
2018-07-16 11:10:51 -07:00
Charlotte Weaver
82c4d2948c
Merge branch 'csweaver/addbackend'
2018-07-16 10:58:46 -07:00
Charlotte Weaver
5a15f5a915
mergining addbackend
2018-07-16 10:58:33 -07:00
Charlotte Weaver
8aafd7d271
fix eslint-scope vulnerability
2018-07-12 13:05:27 -07:00
Charlotte Weaver
02799cea8e
No relative imports "up"
2018-07-12 12:59:34 -07:00
Charlotte Weaver
ba9e5f1e41
flake8/lint cleanup
2018-07-12 11:52:24 -07:00
Colin Megill
03ec942723
Merge pull request #115 from chanzuckerberg/eslint-scope
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eslint scope pin
2018-07-12 14:37:29 -04:00
Colin Megill
dd019d83e5
eslint scope pin
2018-07-12 14:36:57 -04:00
Colin Megill
2721e91788
zoom working
2018-07-11 11:28:23 -04:00
Charlotte Weaver
f466ef6553
Added entry point to run cellxgene from console
2018-07-10 12:56:42 -07:00
Charlotte Weaver
a3bf802aec
Add example dataset
2018-07-06 16:03:24 -07:00
Charlotte Weaver
071c24d0f4
Add client build script
2018-07-06 15:59:20 -07:00
Charlotte Weaver
d937485034
Merge branch 'csweaver/packaging' of github.com:chanzuckerberg/cellxgene into csweaver/packaging
2018-07-06 15:51:08 -07:00
Charlotte Weaver
0639759a90
Initial packaging working
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pip install works if client files are built and moved manually
2018-07-06 15:44:22 -07:00
Charlotte Weaver
558950852e
Merge remote-tracking branch 'origin/csweaver/addbackend' into csweaver/addbackend
2018-07-06 15:43:37 -07:00
Charlotte Weaver
cd1b67fd09
Rename diffexpression
2018-07-06 15:41:08 -07:00
Charlotte Weaver
5b9ddfa1a6
Added documentation to filter
2018-07-06 15:40:21 -07:00
Charlotte Weaver
354eacc3c8
Remove cell ids from engine
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Previously I just removed them from the driver
2018-07-06 15:38:42 -07:00
Charlotte Weaver
cf12acd47c
Added documentation to filter
2018-07-06 10:26:46 -07:00
Charlotte Weaver
6652c07495
Remove cell ids from engine
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Previously I just removed them from the driver
2018-07-06 10:26:33 -07:00
Charlotte Weaver
e3bf06ca61
Config file no longer necessary
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Config is solely from environment variables instead.
2018-07-06 10:13:24 -07:00
Charlotte Weaver
01de23c533
Fixed some faulty requirements
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Not tested on latest flask version yet
The latest anndata is causing problems with sorting numeric indexes. I made a separate issue to actually fix that at a later point.
2018-07-06 10:12:32 -07:00
Colin Megill
4365b24212
remove log
2018-07-05 21:55:30 -04:00
Colin Megill
aa6f38e0a3
working! & pretty smooth, with responsive extra click
2018-07-05 21:44:36 -04:00
Charlotte Weaver
451f95b0a4
Initial packaging working
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pip install works if client files are built and moved manually
2018-07-05 17:06:51 -07:00
