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Code Issues Packages Projects Releases Wiki Activity
438 Commits 11 Branches 54 Tags
0c81c341d5cb0bb2856bb28fee2f49a3802af229
Commit Graph
152 Commits
Author SHA1 Message Date
chhylp123 0c81c341d5 update r351 2021-07-27 19:51:20 -04:00
chhylp123 3c8a933b8a Merge remote-tracking branch 'origin/dev-lh3' 2021-07-27 19:50:29 -04:00
chhylp123 321acb2d8a update for r350 2021-07-26 00:16:00 -04:00
chhylp123 b14f894160 seperate purgeing and hom peak 2021-07-25 11:23:06 -04:00
chhylp123 62b7418257 update 0.15.5 2021-07-22 00:59:52 -04:00
chhylp123 a531a4cbda debugging for huge datasets 2021-06-27 07:48:29 -04:00
chhylp123 0410662841 print misjoin debug 2021-06-23 09:49:44 -04:00
chhylp123 5a400af39d r342-misjoin 2021-06-19 14:09:09 -04:00
chhylp123 9dc530cbfb low hamming for sampels with low het rate 2021-06-09 20:10:50 -04:00
chhylp123 ca67e7a9b3 rollback 2021-05-31 18:16:20 -04:00
chhylp123 24e5453781 bug fix 2021-05-02 14:16:36 -04:00
chhylp123 9c205c8271 resove tangle by hic 2021-04-30 22:44:48 -04:00
chhylp123 71e91f3fc2 assgin disconnected parts 2021-04-28 20:27:43 -04:00
chhylp123 2fc2268268 phasing improvement 2021-04-27 21:35:49 -04:00
chhylp123 11430d6a3b r329 2021-04-25 14:50:36 -04:00
chhylp123 e52e897113 clean code 2021-04-24 00:17:08 -04:00
chhylp123 c972c64b39 add "n-weight" 2021-04-24 00:03:36 -04:00
chhylp123 f8ee584291 code clean 2021-04-16 20:28:48 -04:00
chhylp123 36afbce9bc update unitig distance 2021-04-12 04:54:06 -04:00
chhylp123 46e899bbae backup r321 2021-04-01 21:02:57 -04:00
chhylp123 0605aa1961 r317 2021-03-27 02:46:48 -04:00
chhylp123 d89a630ff3 update contig flipping 2021-03-25 03:03:19 -04:00
chhylp123 9e3e1e8bab update r351 2021-03-20 23:08:55 -04:00
chhylp123 ede6ccef00 fix misassemblies 2021-03-20 18:36:02 -04:00
Heng Li 863b20773a Merge branch 'master' into dev-lh3 2021-03-18 16:11:43 -04:00
chhylp123 e6e6dbf7b3 remove unnecessary bin files of Hi-C 2021-03-18 13:44:30 -04:00
chhylp123 2db42c8c00 update version number 2021-03-18 13:18:46 -04:00
chhylp123 98a04c168a update r313 2021-03-18 05:26:33 -04:00
chhylp123 8aa87fdce8 purge_dups for high het 2021-03-08 20:52:11 -05:00
Heng Li 8e98fb2276 Merge branch 'master' into dev-lh3 2021-03-02 19:27:44 -05:00
chhylp123 e8b92f7a40 backup for hic 2021-02-18 00:58:25 -05:00
chhylp123 d2ca12604b update r312 2021-02-14 14:17:43 -05:00
chhylp123 d2bf15eba4 update r311 2021-02-14 13:32:02 -05:00
chhylp123 18086e2c2e update 0.14-r310 2021-02-13 23:21:45 -05:00
chhylp123 8467d58ef1 for v0.14 2021-02-09 13:00:23 -05:00
Heng Li 205eadf346 r334: ignore a high-occ seed in a small window 2021-01-23 16:25:52 -05:00
Heng Li 61befd357a r333: also subsample high-freq mz during indexing 2021-01-22 23:17:25 -05:00
Heng Li 3b8f73fbab r332: increased mz sample dist from 200 to 500 2021-01-22 10:31:29 -05:00
Heng Li da672118e5 r330: unimap heuristic for mz sampling 2021-01-21 11:05:37 -05:00
chhylp123 a009026e65 fix bug for broken bubbles 2021-01-15 07:33:13 -05:00
chhylp123 53a655d802 init partition 2020-12-26 19:01:24 -05:00
chhylp123 73b5ef6769 bubble phasing 2020-11-21 20:50:31 -05:00
chhylp123 3a1a3750e9 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-11-16 01:49:07 -05:00
chhylp123 d87314a07e resolve conflict 2020-11-16 01:44:12 -05:00
Heng Li 02f0b5dd22 r329: a bit code cleanup 2020-11-03 00:44:15 -05:00
Heng Li dcb583bd69 r328: use binomial heap for general cases 2020-11-01 22:49:06 -05:00
Heng Li 6fa4d44426 r327: choose up to 3 high-freq minimizers 2020-11-01 10:44:02 -05:00
Heng Li f02eb66e6a r326: select high-occ k-mers (experimental) 2020-10-29 22:36:54 -04:00
Heng Li f37c4e29fa a bit refactoring for the next change 2020-10-29 18:24:47 -04:00
Heng Li eddb8173da added --min-hist-cnt for #49 2020-10-26 16:28:30 -04:00