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294 Commits 11 Branches 54 Tags
320dc58127512acb01ac347262c5aa37d0d95d13
Commit Graph
93 Commits
Author SHA1 Message Date
chhylp123 320dc58127 fix bug at r_utg 2020-08-04 16:43:50 -04:00
chhylp123 ef5ba0cc2c update help/man 2020-07-31 21:32:02 -04:00
chhylp123 7c385e219a update version number 2020-07-31 12:36:37 -04:00
chhylp123 9d659fd2e0 update v0.10 2020-07-31 12:23:25 -04:00
chhylp123 ace34ae2b8 for high-het and coverage 2020-07-28 13:07:35 -04:00
Heng Li 94008c02ac Re-release hifiasm-0.9 (r289) 2020-07-19 14:44:28 -04:00
Heng Li 1e4d67ee64 r288: reorganized command line help messages 2020-07-19 13:43:30 -04:00
Heng Li ff4ef89fe3 r287: fixed the INT32_MAX compiling error 2020-07-19 11:22:23 -04:00
chhylp123 952471657f change max coverage of pri-range 2020-07-18 17:40:58 -04:00
chhylp123 88ab801717 update HA_VERSION 2020-07-13 22:45:49 -04:00
chhylp123 a309e610ca resolve conflict 2020-07-13 22:44:40 -04:00
chhylp123 fda858f9e7 update coverage 2020-07-13 22:34:26 -04:00
chhylp123 c01b593d7c using coverage 2020-07-12 16:03:01 -04:00
chhylp123 a25c37ed89 update k-mer peaks 2020-07-07 13:20:25 -04:00
Heng Li 309e885365 Release hifiasm-0.8 (r279) 2020-06-27 19:56:49 -04:00
chhylp123 71f6c93d58 add options 2020-06-08 17:51:36 -04:00
Heng Li 97f6efc4da r255: faster way to extract reads 2020-06-03 21:38:59 -04:00
Heng Li eddbc61952 r254: added --ex-list and --ex-iter 2020-06-03 20:46:34 -04:00
Heng Li e247c5f042 r253: Merge branch 'master' into dev-lh3 2020-05-23 21:43:22 -04:00
chhylp123 d36e1e7782 fixed bugs for trio-binning 2020-05-17 11:53:12 -04:00
Heng Li f6ea45b58a r251: always keep the best hits 2020-05-08 00:40:53 -04:00
Heng Li e544360043 r250: fixed a bug in selecting top chains 2020-05-07 14:49:49 -04:00
Heng Li 3364a29b87 r249: make max overlap error rate CLI options 2020-05-06 01:16:50 -04:00
Heng Li 331e437c72 r248: contained reads not handled properly 2020-05-03 00:27:53 -04:00
chhylp123 7f6725ead3 expose purge_dups 2020-04-18 00:45:47 -04:00
Heng Li 85c57fd087 r246: made purge_dups optional for trio binning 2020-04-15 23:57:18 -04:00
chhylp123 57e979ca17 update for v0.5.0 2020-04-14 00:10:58 -04:00
Heng Li a06ee39433 r244: use 3 rounds of error correction by default 2020-04-13 19:51:15 -04:00
Heng Li 8907e9c64f r243: Merge branch 'master' into dev-lh3 2020-04-13 15:18:21 -04:00
Heng Li 946a0f4115 r238: got rid of LIS chaining 2020-04-13 14:44:10 -04:00
Heng Li b333addb6c r237: fall back to DP chaining more often 2020-04-13 08:39:05 -04:00
chhylp123 b93baa3cbd update README 2020-04-12 20:46:54 -04:00
Heng Li cc166c8ff5 r235: clarified option -f 2020-04-12 19:42:02 -04:00
Heng Li cdd5f3e4e0 r234: fixed a bug for -r of an odder number 2020-04-12 19:25:53 -04:00
Heng Li 2c4de3a326 r230: the first anchor score was not adjusted 2020-04-12 10:39:42 -04:00
Heng Li 75a89c214d r229: LIS score is still not exactly right 2020-04-12 10:19:28 -04:00
Heng Li 22b681b830 r228: resolved a compiler warning 2020-04-12 09:56:50 -04:00
Heng Li 4d7600361c r226b: prefer unique anchors 2020-04-11 22:28:21 -04:00
Heng Li c4397a9400 r226: more careful about ma_hit_t_alloc memory 2020-04-11 22:05:07 -04:00
Heng Li e6b5b666a2 r224: versioning 2020-04-11 00:14:33 -04:00
Heng Li c710c6ea48 r221: sync with hifiasm parameter 
Probably has no practical effect
 2020-04-10 21:49:01 -04:00
Heng Li c37ea00d6a r220: resumed versioning 2020-04-10 19:12:32 -04:00
Heng Li 22b2e1e9e1 r217: fixed a bug in LIS chaining score 
Also fall back to DP chaining more often
 2020-04-10 13:25:25 -04:00
Heng Li 71328f7423 r215: binning with external list (NOT TESTED!!) 2020-04-10 01:06:43 -04:00
Heng Li f32bfc904a r215: prepare for list-based binning 2020-04-10 00:12:19 -04:00
Heng Li 7a35bd7fcc r213: renamed trio binning output files 2020-04-09 20:40:01 -04:00
Heng Li c3f032da37 r212: LIS chaining was not working 2020-04-09 10:43:37 -04:00
Heng Li c41aae0630 r211: added --write-paf/--write-ec/--skip-triobin 2020-04-08 22:32:54 -04:00
Heng Li 8efcdefcaf r207: multiple input files were not working 2020-04-07 12:40:10 -04:00
Heng Li a79fd0f360 r206: apply trio binning when loading from binary 2020-04-06 16:58:29 -04:00