46 Commits

Author	SHA1	Message	Date
Heng Li	7a35bd7fcc	r213: renamed trio binning output files	2020-04-09 20:40:01 -04:00
Heng Li	c41aae0630	r211: added --write-paf/--write-ec/--skip-triobin	2020-04-08 22:32:54 -04:00
Heng Li	adbc65feda	r201: automatically adjust -N	2020-04-05 22:43:01 -04:00
Heng Li	0f1994fc1f	r198: made VERBOSE_GFA a CL option --dbg-gfa	2020-04-05 13:01:03 -04:00
Heng Li	f0c53e9948	r192: estimate buffer memory	2020-04-05 11:17:12 -04:00
Heng Li	8c27dbb52f	r191: changed the default to -N400 -k51 -w51	2020-04-04 12:55:19 -04:00
Heng Li	dbe66d259d	r189: print statistics	2020-04-04 00:14:53 -04:00
Heng Li	18b69f1a72	r187: reversed round in clear_opt()	2020-04-03 22:19:55 -04:00
Heng Li	ffba3ce0ef	r182: explain -N	2020-04-03 10:42:09 -04:00
Heng Li	968b4caef9	r181: limit the max number of chains	2020-04-02 21:55:00 -04:00
Heng Li	e75b93ae12	r175: start versioning	2020-03-28 11:52:14 -04:00
Heng Li	1d4f34a36c	changed the default -D from 7 to 5	2020-03-28 11:43:44 -04:00
Heng Li	5e16483b43	option to skip k-mer filtering	2020-03-27 22:32:39 -04:00
Heng Li	19648873b9	exposed mz_win and high_factor to CLI	2020-03-27 21:39:57 -04:00
Heng Li	e116f6e09d	position table; unfinished	2020-03-25 19:17:07 -04:00
Heng Li	3e897560c4	minimizer filtering apparently works	2020-03-25 00:38:13 -04:00
Heng Li	f70257c260	support HPC k-mer	2020-03-24 19:58:21 -04:00
Heng Li	64edb06e08	NOT WORKING!!! added all k-mer counter	2020-03-24 12:29:46 -04:00
Heng Li	59a9d62df9	NOT WORKING!!! backup only	2020-03-24 00:44:56 -04:00
chhylp123	3c1d3cf6a1	disable debug	2020-03-23 00:25:20 -04:00
chhylp123	670bd10093	update man	2020-03-22 18:01:04 -04:00
chhylp123	90e290636a	code clean	2020-03-22 17:06:36 -04:00
chhylp123	c72d419711	for hifiasm 3.0	2020-03-22 16:54:32 -04:00
chhylp123	6246132702	update for 0.2.0	2020-02-07 14:52:14 -05:00
chhylp123	c63ce670f7	improved N50	2020-01-14 10:59:51 -05:00
Haoyu Cheng	7ecd489edc	update man-page	2020-01-04 12:01:35 +08:00
Haoyu Cheng	d8416873f3	upadate man-page and readme	2020-01-04 11:54:08 +08:00
Haoyu Cheng	1e46798bfb	update readme and help information	2020-01-02 08:58:50 +08:00
Heng Li	1e71947a23	bumped version number to 0.1.0	2019-12-30 12:20:07 -05:00
Heng Li	3a61b1b0b0	changed the output file names	2019-12-30 12:01:54 -05:00
Haoyu Cheng	a60a2d7ddd	update help	2019-12-28 16:38:21 -05:00
Haoyu Cheng	ea248038c6	Update for overlaps	2019-12-28 16:18:50 -05:00
Haoyu Cheng	54c80d8400	README	2019-12-28 05:07:35 -05:00
Haoyu Cheng	1523d10291	README	2019-12-28 04:45:53 -05:00
Haoyu Cheng	9ef00f749a	update README	2019-12-26 14:44:11 -05:00
Haoyu Cheng	4ac9907e49	clean code	2019-12-26 02:26:24 -05:00
Haoyu Cheng	ada03ea388	final DP-based assembly	2019-11-13 20:18:11 -05:00
Haoyu Cheng	d5327fe9ee	phasing	2019-09-02 10:30:14 -04:00
Haoyu Cheng	3c0c201cdf	improve speed	2019-08-26 02:22:20 -04:00
Haoyu Cheng	6802d873cf	fix insertion bug	2019-07-18 03:02:58 -04:00
Haoyu Cheng	b553f3ac5e	POA	2019-07-01 09:08:25 -04:00
Haoyu Cheng	17553e0a42	S/L index&reads	2019-05-16 21:14:50 -04:00
Haoyu Cheng	45355a1103	Update position hash table	2019-05-14 17:02:03 -04:00
Haoyu Cheng	9302fc6058	Finish multiple thread counting	2019-05-12 02:16:20 -04:00
Haoyu Cheng	eee68408be	Using klib	2019-05-10 16:14:01 -04:00
Haoyu Cheng	0b209dd1e9	Input reads	2019-05-10 00:11:19 -04:00