xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-27 19:18:12 +08:00
Code Issues Packages Projects Releases Wiki Activity
336 Commits 11 Branches 54 Tags
ceeb4562afb2d2d1b53427dc7fb116a4e523bd26
Commit Graph
20 Commits
Author SHA1 Message Date
chhylp123 fda13cb0e4 update -z 2021-02-02 12:45:50 -05:00
Heng Li eddb8173da added --min-hist-cnt for #49 2020-10-26 16:28:30 -04:00
chhylp123 89fcb35a64 for debugging 2020-10-11 14:32:33 -04:00
chhylp123 03cf0d475c save bfore multiple overlaps 2020-08-23 08:46:33 -04:00
chhylp123 a25c37ed89 update k-mer peaks 2020-07-07 13:20:25 -04:00
Heng Li f32bfc904a r215: prepare for list-based binning 2020-04-10 00:12:19 -04:00
Heng Li adbc65feda r201: automatically adjust -N 2020-04-05 22:43:01 -04:00
Heng Li f0c53e9948 r192: estimate buffer memory 2020-04-05 11:17:12 -04:00
Heng Li 968b4caef9 r181: limit the max number of chains 2020-04-02 21:55:00 -04:00
Heng Li b7e5d1c4d3 r176: enabled the minimap2 chaining heuristic 2020-04-01 22:06:14 -04:00
Heng Li 30a70bc307 fixed wrong coordinate 2020-03-27 13:45:09 -04:00
Heng Li 1bb174a04e fixed missing read names 
Overlapping not working yet (now confirmed)
 2020-03-27 12:51:08 -04:00
Heng Li 293f4b6b58 to replace get_new_candidates(); UNFINISHED! 2020-03-27 11:21:08 -04:00
Heng Li 7271c106e4 reverted to the older k_mer_hit definition 2020-03-27 10:40:31 -04:00
Heng Li 10ed8b36ec implemented ha_pt_get() 2020-03-26 23:00:00 -04:00
Heng Li 79bc553da6 removed hifiasm hash table index 2020-03-26 16:10:01 -04:00
Heng Li 387d6336d8 read from read store 2020-03-26 15:17:49 -04:00
Heng Li 0dd927bdce write to hifiasm read store 2020-03-26 14:23:17 -04:00
Heng Li ff8194d291 position indexing apparently working 2020-03-25 23:44:15 -04:00
Heng Li 716713685c renamed files for code cleanup 2020-03-25 19:59:17 -04:00