38 Commits

Author	SHA1	Message	Date
chhylp123	bbd3394b4a	lack final alignment	2022-10-01 19:53:02 -04:00
chhylp123	f4cc895fa0	update ed	2022-09-20 22:48:59 -04:00
chhylp123	4e7bb7eeb9	fix cigar	2022-09-18 23:17:58 -04:00
chhylp123	69d0e18fe5	ed macro	2022-09-14 15:38:55 -04:00
chhylp123	2300dc63bb	extension	2022-09-14 00:23:44 -04:00
chhylp123	5da05f308f	extend ed alignment	2022-09-13 17:29:27 -04:00
chhylp123	9b31d47379	exit(0) for --help	2021-04-28 23:10:51 -04:00
Heng Li	f0c53e9948	r192: estimate buffer memory	2020-04-05 11:17:12 -04:00
Heng Li	d529dcea3f	r183: reorganized the major workflow	2020-04-03 13:34:07 -04:00
Heng Li	e75b93ae12	r175: start versioning	2020-03-28 11:52:14 -04:00
Heng Li	5e16483b43	option to skip k-mer filtering	2020-03-27 22:32:39 -04:00
Heng Li	1bb174a04e	fixed missing read names ... Overlapping not working yet (now confirmed)	2020-03-27 12:51:08 -04:00
Heng Li	10ed8b36ec	implemented ha_pt_get()	2020-03-26 23:00:00 -04:00
Heng Li	387d6336d8	read from read store	2020-03-26 15:17:49 -04:00
Heng Li	0dd927bdce	write to hifiasm read store	2020-03-26 14:23:17 -04:00
Heng Li	ff8194d291	position indexing apparently working	2020-03-25 23:44:15 -04:00
Heng Li	716713685c	renamed files for code cleanup	2020-03-25 19:59:17 -04:00
Heng Li	585bbbe213	a bit code cleanup	2020-03-25 10:31:38 -04:00
Heng Li	3e897560c4	minimizer filtering apparently works	2020-03-25 00:38:13 -04:00
Heng Li	84361ba6dd	dense minimizer apparently works	2020-03-24 23:05:38 -04:00
Heng Li	64edb06e08	NOT WORKING!!! added all k-mer counter	2020-03-24 12:29:46 -04:00
Heng Li	30eddefc57	main() should return 0 on success	2019-12-30 10:44:13 -05:00
Haoyu Cheng	1523d10291	README	2019-12-28 04:45:53 -05:00
Haoyu Cheng	4ac9907e49	clean code	2019-12-26 02:26:24 -05:00
Haoyu Cheng	ada03ea388	final DP-based assembly	2019-11-13 20:18:11 -05:00
Haoyu Cheng	d5327fe9ee	phasing	2019-09-02 10:30:14 -04:00
Haoyu Cheng	3c0c201cdf	improve speed	2019-08-26 02:22:20 -04:00
Haoyu Cheng	f508762557	resure alignment	2019-07-12 10:18:25 -04:00
Haoyu Cheng	87873d6323	edit distance based error correction	2019-07-07 03:44:59 -04:00
Haoyu Cheng	ddd96d8456	Merge overlap	2019-05-18 01:03:24 -04:00
Haoyu Cheng	7cebaf271b	Fix bug	2019-05-17 00:52:10 -04:00
Haoyu Cheng	45355a1103	Update position hash table	2019-05-14 17:02:03 -04:00
Haoyu Cheng	df18b5af76	Update modimers	2019-05-12 04:03:54 -04:00
Haoyu Cheng	9302fc6058	Finish multiple thread counting	2019-05-12 02:16:20 -04:00
Haoyu Cheng	94bd75e576	Multiple threads reading	2019-05-11 00:19:16 -04:00
Haoyu Cheng	eee68408be	Using klib	2019-05-10 16:14:01 -04:00
Haoyu Cheng	0b209dd1e9	Input reads	2019-05-10 00:11:19 -04:00
Haoyu Cheng	acc52991a7	Add main.cpp	2019-05-09 16:03:46 -04:00