39 Commits

Author	SHA1	Message	Date
Heng Li	76de054331	r186: fixed memory leaks when loading from disk	2020-04-03 20:35:47 -04:00
Heng Li	992322f8e3	r185: fixed a few more memory leaks	2020-04-03 20:14:20 -04:00
Heng Li	968b4caef9	r181: limit the max number of chains	2020-04-02 21:55:00 -04:00
Heng Li	64edb06e08	NOT WORKING!!! added all k-mer counter	2020-03-24 12:29:46 -04:00
Heng Li	cfb0a5c8ec	reduced the position to 32 bits	2020-03-23 09:54:42 -04:00
chhylp123	3c1d3cf6a1	disable debug	2020-03-23 00:25:20 -04:00
chhylp123	90e290636a	code clean	2020-03-22 17:06:36 -04:00
chhylp123	c72d419711	for hifiasm 3.0	2020-03-22 16:54:32 -04:00
chhylp123	6246132702	update for 0.2.0	2020-02-07 14:52:14 -05:00
chhylp123	c63ce670f7	improved N50	2020-01-14 10:59:51 -05:00
Haoyu Cheng	d8416873f3	upadate man-page and readme	2020-01-04 11:54:08 +08:00
Heng Li	4ea12b651f	fixed a typo	2019-12-30 12:17:15 -05:00
Heng Li	3a61b1b0b0	changed the output file names	2019-12-30 12:01:54 -05:00
Haoyu Cheng	cb487a761c	fix bugs	2019-12-29 10:10:10 -05:00
Haoyu Cheng	4dd637127f	fix bugs	2019-12-29 02:38:10 -05:00
Haoyu Cheng	1523d10291	README	2019-12-28 04:45:53 -05:00
Haoyu Cheng	53d1692331	fix TODO	2019-12-26 12:42:50 -05:00
Heng Li	b7117af560	TAB to SPACE	2019-12-26 10:14:14 -05:00
Heng Li	b787ebe195	TAB to SPACEs	2019-12-26 10:11:44 -05:00
Heng Li	e6cdac9ea9	fixed a few harmless warnings	2019-12-26 10:06:58 -05:00
Heng Li	03c8899a34	fixed clang warnings	2019-12-26 09:40:35 -05:00
Haoyu Cheng	4ac9907e49	clean code	2019-12-26 02:26:24 -05:00
Haoyu Cheng	7f9c73507d	same haplotype chimeric reads detection	2019-12-24 14:43:12 -05:00
Haoyu Cheng	29fe35eb21	remove debug information	2019-12-24 10:37:40 -05:00
Haoyu Cheng	ea51239441	new chimeric detection	2019-12-24 05:03:59 -05:00
Haoyu Cheng	1ead2d3081	M50 improved	2019-12-23 09:37:26 -05:00
Haoyu Cheng	06556e4a9b	backup without bundaries processing	2019-12-17 16:58:20 -05:00
Haoyu Cheng	9c25075fed	update for base-level alignment	2019-12-12 03:06:47 -05:00
Haoyu Cheng	f1cde019a9	for break points at chr11	2019-12-12 00:31:24 -05:00
Haoyu Cheng	09603432e5	fix bugs for overlaps of different length	2019-12-09 17:07:11 -05:00
Haoyu Cheng	fca9c8db15	fix cross-chr bugs	2019-11-30 16:01:37 -05:00
Haoyu Cheng	f95691db3a	generate contig	2019-11-27 15:07:33 -05:00
Haoyu Cheng	cb26e0ecd4	unclean graph	2019-11-22 21:58:56 -05:00
Heng Li	db7e31f90d	Merge branch 'master' into new-mak	2019-11-22 15:01:28 -05:00
Haoyu Cheng	c7419d3e5e	ortholog-based cutting	2019-11-22 14:59:28 -05:00
Heng Li	b81b7f9213	Fixed a compiling error caused by UINT32_MAX	2019-11-22 14:36:37 -05:00
Haoyu Cheng	3425bd020b	more cutting methods	2019-11-20 15:43:44 -05:00
Haoyu Cheng	e8ff0c1dbc	backup	2019-11-19 01:32:39 -05:00
Haoyu Cheng	ada03ea388	final DP-based assembly	2019-11-13 20:18:11 -05:00