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594 Commits 11 Branches 54 Tags
hifiasm_dev_debug
Commit Graph
242 Commits
Author SHA1 Message Date
chhylp123 24e5453781 bug fix 2021-05-02 14:16:36 -04:00
chhylp123 9c205c8271 resove tangle by hic 2021-04-30 22:44:48 -04:00
chhylp123 71e91f3fc2 assgin disconnected parts 2021-04-28 20:27:43 -04:00
chhylp123 2fc2268268 phasing improvement 2021-04-27 21:35:49 -04:00
chhylp123 11430d6a3b r329 2021-04-25 14:50:36 -04:00
chhylp123 e52e897113 clean code 2021-04-24 00:17:08 -04:00
chhylp123 c972c64b39 add "n-weight" 2021-04-24 00:03:36 -04:00
chhylp123 f8ee584291 code clean 2021-04-16 20:28:48 -04:00
chhylp123 36afbce9bc update unitig distance 2021-04-12 04:54:06 -04:00
chhylp123 46e899bbae backup r321 2021-04-01 21:02:57 -04:00
chhylp123 0605aa1961 r317 2021-03-27 02:46:48 -04:00
chhylp123 d89a630ff3 update contig flipping 2021-03-25 03:03:19 -04:00
chhylp123 9e3e1e8bab update r351 2021-03-20 23:08:55 -04:00
chhylp123 ede6ccef00 fix misassemblies 2021-03-20 18:36:02 -04:00
Heng Li 863b20773a Merge branch 'master' into dev-lh3 2021-03-18 16:11:43 -04:00
chhylp123 e6e6dbf7b3 remove unnecessary bin files of Hi-C 2021-03-18 13:44:30 -04:00
chhylp123 2db42c8c00 update version number 2021-03-18 13:18:46 -04:00
chhylp123 98a04c168a update r313 2021-03-18 05:26:33 -04:00
chhylp123 8aa87fdce8 purge_dups for high het 2021-03-08 20:52:11 -05:00
Heng Li 8e98fb2276 Merge branch 'master' into dev-lh3 2021-03-02 19:27:44 -05:00
chhylp123 e8b92f7a40 backup for hic 2021-02-18 00:58:25 -05:00
chhylp123 d2ca12604b update r312 2021-02-14 14:17:43 -05:00
chhylp123 d2bf15eba4 update r311 2021-02-14 13:32:02 -05:00
chhylp123 18086e2c2e update 0.14-r310 2021-02-13 23:21:45 -05:00
chhylp123 8467d58ef1 for v0.14 2021-02-09 13:00:23 -05:00
Heng Li 205eadf346 r334: ignore a high-occ seed in a small window 2021-01-23 16:25:52 -05:00
Heng Li 61befd357a r333: also subsample high-freq mz during indexing 2021-01-22 23:17:25 -05:00
Heng Li 3b8f73fbab r332: increased mz sample dist from 200 to 500 2021-01-22 10:31:29 -05:00
Heng Li da672118e5 r330: unimap heuristic for mz sampling 2021-01-21 11:05:37 -05:00
chhylp123 a009026e65 fix bug for broken bubbles 2021-01-15 07:33:13 -05:00
chhylp123 53a655d802 init partition 2020-12-26 19:01:24 -05:00
chhylp123 73b5ef6769 bubble phasing 2020-11-21 20:50:31 -05:00
chhylp123 3a1a3750e9 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-11-16 01:49:07 -05:00
chhylp123 d87314a07e resolve conflict 2020-11-16 01:44:12 -05:00
Heng Li 02f0b5dd22 r329: a bit code cleanup 2020-11-03 00:44:15 -05:00
Heng Li dcb583bd69 r328: use binomial heap for general cases 2020-11-01 22:49:06 -05:00
Heng Li 6fa4d44426 r327: choose up to 3 high-freq minimizers 2020-11-01 10:44:02 -05:00
Heng Li f02eb66e6a r326: select high-occ k-mers (experimental) 2020-10-29 22:36:54 -04:00
Heng Li f37c4e29fa a bit refactoring for the next change 2020-10-29 18:24:47 -04:00
Heng Li eddb8173da added --min-hist-cnt for #49 2020-10-26 16:28:30 -04:00
chhylp123 0cc02035c5 HiC full index 2020-10-26 11:01:48 -04:00
chhylp123 b2b4624cea rerelease v0.13 2020-10-22 14:24:59 -04:00
chhylp123 91d4915da7 release v0.13 2020-10-21 21:57:43 -04:00
chhylp123 89fcb35a64 for debugging 2020-10-11 14:32:33 -04:00
chhylp123 b629dd8556 freeze-0.12-r304 2020-08-23 23:38:04 -04:00
chhylp123 0a2559e4a0 freeze-r304 2020-08-23 23:36:45 -04:00
chhylp123 03cf0d475c save bfore multiple overlaps 2020-08-23 08:46:33 -04:00
chhylp123 90d3cb69b9 fix version number 2020-08-05 18:04:47 -04:00
chhylp123 927d66262b rerelase v0.11 2020-08-05 17:50:53 -04:00
chhylp123 320dc58127 fix bug at r_utg 2020-08-04 16:43:50 -04:00