xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-15 12:47:57 +08:00
Code Issues Packages Projects Releases Wiki Activity
663 Commits 11 Branches 54 Tags
hybrid_v1
Commit Graph

45 Commits

Author SHA1 Message Date
chhylp123
bca2394b69 unsucessful hpc mark 2026-05-15 19:02:16 -04:00
chhylp123
815d709fb9 fall back to avx2 2026-04-01 22:28:54 -04:00
chhylp123
53e1b150c3 bug fixed for memory leak 2026-02-12 16:47:32 -05:00
chhylp123
d6ba102d42 r852 -> hybrid correction 2026-02-11 16:38:27 -05:00
chhylp123
2c77b3c87e ont overlapping 2024-12-21 03:17:17 -05:00
chhylp123
4ca8951f9d fix bug for gen_contain_consensus_chain 2023-10-22 13:23:27 -04:00
chhylp123
b533067835 enable dbg-ovec 2023-03-10 23:30:24 -05:00
chhylp123
bbd3394b4a lack final alignment 2022-10-01 19:53:02 -04:00
chhylp123
f4cc895fa0 update ed 2022-09-20 22:48:59 -04:00
chhylp123
4e7bb7eeb9 fix cigar 2022-09-18 23:17:58 -04:00
chhylp123
69d0e18fe5 ed macro 2022-09-14 15:38:55 -04:00
chhylp123
2300dc63bb extension 2022-09-14 00:23:44 -04:00
chhylp123
5da05f308f extend ed alignment 2022-09-13 17:29:27 -04:00
chhylp123
9b31d47379 exit(0) for --help 2021-04-28 23:10:51 -04:00
Heng Li
f0c53e9948 r192: estimate buffer memory 2020-04-05 11:17:12 -04:00
Heng Li
d529dcea3f r183: reorganized the major workflow 2020-04-03 13:34:07 -04:00
Heng Li
e75b93ae12 r175: start versioning 2020-03-28 11:52:14 -04:00
Heng Li
5e16483b43 option to skip k-mer filtering 2020-03-27 22:32:39 -04:00
Heng Li
1bb174a04e fixed missing read names 
Overlapping not working yet (now confirmed)
 2020-03-27 12:51:08 -04:00
Heng Li
10ed8b36ec implemented ha_pt_get() 2020-03-26 23:00:00 -04:00
Heng Li
387d6336d8 read from read store 2020-03-26 15:17:49 -04:00
Heng Li
0dd927bdce write to hifiasm read store 2020-03-26 14:23:17 -04:00
Heng Li
ff8194d291 position indexing apparently working 2020-03-25 23:44:15 -04:00
Heng Li
716713685c renamed files for code cleanup 2020-03-25 19:59:17 -04:00
Heng Li
585bbbe213 a bit code cleanup 2020-03-25 10:31:38 -04:00
Heng Li
3e897560c4 minimizer filtering apparently works 2020-03-25 00:38:13 -04:00
Heng Li
84361ba6dd dense minimizer apparently works 2020-03-24 23:05:38 -04:00
Heng Li
64edb06e08 NOT WORKING!!! added all k-mer counter 2020-03-24 12:29:46 -04:00
Heng Li
30eddefc57 main() should return 0 on success 2019-12-30 10:44:13 -05:00
Haoyu Cheng
1523d10291 README 2019-12-28 04:45:53 -05:00
Haoyu Cheng
4ac9907e49 clean code 2019-12-26 02:26:24 -05:00
Haoyu Cheng
ada03ea388 final DP-based assembly 2019-11-13 20:18:11 -05:00
Haoyu Cheng
d5327fe9ee phasing 2019-09-02 10:30:14 -04:00
Haoyu Cheng
3c0c201cdf improve speed 2019-08-26 02:22:20 -04:00
Haoyu Cheng
f508762557 resure alignment 2019-07-12 10:18:25 -04:00
Haoyu Cheng
87873d6323 edit distance based error correction 2019-07-07 03:44:59 -04:00
Haoyu Cheng
ddd96d8456 Merge overlap 2019-05-18 01:03:24 -04:00
Haoyu Cheng
7cebaf271b Fix bug 2019-05-17 00:52:10 -04:00
Haoyu Cheng
45355a1103 Update position hash table 2019-05-14 17:02:03 -04:00
Haoyu Cheng
df18b5af76 Update modimers 2019-05-12 04:03:54 -04:00
Haoyu Cheng
9302fc6058 Finish multiple thread counting 2019-05-12 02:16:20 -04:00
Haoyu Cheng
94bd75e576 Multiple threads reading 2019-05-11 00:19:16 -04:00
Haoyu Cheng
eee68408be Using klib 2019-05-10 16:14:01 -04:00
Haoyu Cheng
0b209dd1e9 Input reads 2019-05-10 00:11:19 -04:00
Haoyu Cheng
acc52991a7 Add main.cpp 2019-05-09 16:03:46 -04:00