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Code Issues Packages Projects Releases Wiki Activity
208 Commits 11 Branches 54 Tags
a2884151117fb52cfafc32bcb326aefe6f55d7f6
Commit Graph
45 Commits
Author SHA1 Message Date
chhylp123 a288415111 bug fixing for purge_dup 2020-04-08 16:55:04 -04:00
chhylp123 87fc103e63 fix small bug 2020-04-06 02:03:34 -04:00
Heng Li 46f83e152d r199: renamed pre.ovlp.bin to pre.ec.bin 
Also updated the Makefile dependencies
 2020-04-05 13:45:50 -04:00
Heng Li 0f1994fc1f r198: made VERBOSE_GFA a CL option --dbg-gfa 2020-04-05 13:01:03 -04:00
Heng Li 5917aa2f36 Merge branch 'chain-tune' into merge2 2020-04-05 12:07:13 -04:00
chhylp123 ac3fcc339a for purge_dup 2020-04-05 11:10:56 -04:00
Heng Li 76de054331 r186: fixed memory leaks when loading from disk 2020-04-03 20:35:47 -04:00
Heng Li 992322f8e3 r185: fixed a few more memory leaks 2020-04-03 20:14:20 -04:00
Heng Li 968b4caef9 r181: limit the max number of chains 2020-04-02 21:55:00 -04:00
Heng Li 64edb06e08 NOT WORKING!!! added all k-mer counter 2020-03-24 12:29:46 -04:00
Heng Li cfb0a5c8ec reduced the position to 32 bits 2020-03-23 09:54:42 -04:00
chhylp123 3c1d3cf6a1 disable debug 2020-03-23 00:25:20 -04:00
chhylp123 90e290636a code clean 2020-03-22 17:06:36 -04:00
chhylp123 c72d419711 for hifiasm 3.0 2020-03-22 16:54:32 -04:00
chhylp123 6246132702 update for 0.2.0 2020-02-07 14:52:14 -05:00
chhylp123 c63ce670f7 improved N50 2020-01-14 10:59:51 -05:00
Haoyu Cheng d8416873f3 upadate man-page and readme 2020-01-04 11:54:08 +08:00
Heng Li 4ea12b651f fixed a typo 2019-12-30 12:17:15 -05:00
Heng Li 3a61b1b0b0 changed the output file names 2019-12-30 12:01:54 -05:00
Haoyu Cheng cb487a761c fix bugs 2019-12-29 10:10:10 -05:00
Haoyu Cheng 4dd637127f fix bugs 2019-12-29 02:38:10 -05:00
Haoyu Cheng 1523d10291 README 2019-12-28 04:45:53 -05:00
Haoyu Cheng 53d1692331 fix TODO 2019-12-26 12:42:50 -05:00
Heng Li b7117af560 TAB to SPACE 2019-12-26 10:14:14 -05:00
Heng Li b787ebe195 TAB to SPACEs 2019-12-26 10:11:44 -05:00
Heng Li e6cdac9ea9 fixed a few harmless warnings 2019-12-26 10:06:58 -05:00
Heng Li 03c8899a34 fixed clang warnings 2019-12-26 09:40:35 -05:00
Haoyu Cheng 4ac9907e49 clean code 2019-12-26 02:26:24 -05:00
Haoyu Cheng 7f9c73507d same haplotype chimeric reads detection 2019-12-24 14:43:12 -05:00
Haoyu Cheng 29fe35eb21 remove debug information 2019-12-24 10:37:40 -05:00
Haoyu Cheng ea51239441 new chimeric detection 2019-12-24 05:03:59 -05:00
Haoyu Cheng 1ead2d3081 M50 improved 2019-12-23 09:37:26 -05:00
Haoyu Cheng 06556e4a9b backup without bundaries processing 2019-12-17 16:58:20 -05:00
Haoyu Cheng 9c25075fed update for base-level alignment 2019-12-12 03:06:47 -05:00
Haoyu Cheng f1cde019a9 for break points at chr11 2019-12-12 00:31:24 -05:00
Haoyu Cheng 09603432e5 fix bugs for overlaps of different length 2019-12-09 17:07:11 -05:00
Haoyu Cheng fca9c8db15 fix cross-chr bugs 2019-11-30 16:01:37 -05:00
Haoyu Cheng f95691db3a generate contig 2019-11-27 15:07:33 -05:00
Haoyu Cheng cb26e0ecd4 unclean graph 2019-11-22 21:58:56 -05:00
Heng Li db7e31f90d Merge branch 'master' into new-mak 2019-11-22 15:01:28 -05:00
Haoyu Cheng c7419d3e5e ortholog-based cutting 2019-11-22 14:59:28 -05:00
Heng Li b81b7f9213 Fixed a compiling error caused by UINT32_MAX 2019-11-22 14:36:37 -05:00
Haoyu Cheng 3425bd020b more cutting methods 2019-11-20 15:43:44 -05:00
Haoyu Cheng e8ff0c1dbc backup 2019-11-19 01:32:39 -05:00
Haoyu Cheng ada03ea388 final DP-based assembly 2019-11-13 20:18:11 -05:00