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Code Issues Packages Projects Releases Wiki Activity
336 Commits 11 Branches 54 Tags
ceeb4562afb2d2d1b53427dc7fb116a4e523bd26
Commit Graph
109 Commits
Author SHA1 Message Date
chhylp123 8467d58ef1 for v0.14 2021-02-09 13:00:23 -05:00
chhylp123 a009026e65 fix bug for broken bubbles 2021-01-15 07:33:13 -05:00
chhylp123 53a655d802 init partition 2020-12-26 19:01:24 -05:00
chhylp123 73b5ef6769 bubble phasing 2020-11-21 20:50:31 -05:00
chhylp123 3a1a3750e9 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-11-16 01:49:07 -05:00
chhylp123 d87314a07e resolve conflict 2020-11-16 01:44:12 -05:00
Heng Li eddb8173da added --min-hist-cnt for #49 2020-10-26 16:28:30 -04:00
chhylp123 0cc02035c5 HiC full index 2020-10-26 11:01:48 -04:00
chhylp123 b2b4624cea rerelease v0.13 2020-10-22 14:24:59 -04:00
chhylp123 91d4915da7 release v0.13 2020-10-21 21:57:43 -04:00
chhylp123 89fcb35a64 for debugging 2020-10-11 14:32:33 -04:00
chhylp123 b629dd8556 freeze-0.12-r304 2020-08-23 23:38:04 -04:00
chhylp123 0a2559e4a0 freeze-r304 2020-08-23 23:36:45 -04:00
chhylp123 03cf0d475c save bfore multiple overlaps 2020-08-23 08:46:33 -04:00
chhylp123 90d3cb69b9 fix version number 2020-08-05 18:04:47 -04:00
chhylp123 927d66262b rerelase v0.11 2020-08-05 17:50:53 -04:00
chhylp123 320dc58127 fix bug at r_utg 2020-08-04 16:43:50 -04:00
chhylp123 ef5ba0cc2c update help/man 2020-07-31 21:32:02 -04:00
chhylp123 7c385e219a update version number 2020-07-31 12:36:37 -04:00
chhylp123 9d659fd2e0 update v0.10 2020-07-31 12:23:25 -04:00
chhylp123 ace34ae2b8 for high-het and coverage 2020-07-28 13:07:35 -04:00
Heng Li 94008c02ac Re-release hifiasm-0.9 (r289) 2020-07-19 14:44:28 -04:00
Heng Li 1e4d67ee64 r288: reorganized command line help messages 2020-07-19 13:43:30 -04:00
Heng Li ff4ef89fe3 r287: fixed the INT32_MAX compiling error 2020-07-19 11:22:23 -04:00
chhylp123 952471657f change max coverage of pri-range 2020-07-18 17:40:58 -04:00
chhylp123 88ab801717 update HA_VERSION 2020-07-13 22:45:49 -04:00
chhylp123 a309e610ca resolve conflict 2020-07-13 22:44:40 -04:00
chhylp123 fda858f9e7 update coverage 2020-07-13 22:34:26 -04:00
chhylp123 c01b593d7c using coverage 2020-07-12 16:03:01 -04:00
chhylp123 a25c37ed89 update k-mer peaks 2020-07-07 13:20:25 -04:00
Heng Li 309e885365 Release hifiasm-0.8 (r279) 2020-06-27 19:56:49 -04:00
chhylp123 71f6c93d58 add options 2020-06-08 17:51:36 -04:00
Heng Li 97f6efc4da r255: faster way to extract reads 2020-06-03 21:38:59 -04:00
Heng Li eddbc61952 r254: added --ex-list and --ex-iter 2020-06-03 20:46:34 -04:00
Heng Li e247c5f042 r253: Merge branch 'master' into dev-lh3 2020-05-23 21:43:22 -04:00
chhylp123 d36e1e7782 fixed bugs for trio-binning 2020-05-17 11:53:12 -04:00
Heng Li f6ea45b58a r251: always keep the best hits 2020-05-08 00:40:53 -04:00
Heng Li e544360043 r250: fixed a bug in selecting top chains 2020-05-07 14:49:49 -04:00
Heng Li 3364a29b87 r249: make max overlap error rate CLI options 2020-05-06 01:16:50 -04:00
Heng Li 331e437c72 r248: contained reads not handled properly 2020-05-03 00:27:53 -04:00
chhylp123 7f6725ead3 expose purge_dups 2020-04-18 00:45:47 -04:00
Heng Li 85c57fd087 r246: made purge_dups optional for trio binning 2020-04-15 23:57:18 -04:00
chhylp123 57e979ca17 update for v0.5.0 2020-04-14 00:10:58 -04:00
Heng Li a06ee39433 r244: use 3 rounds of error correction by default 2020-04-13 19:51:15 -04:00
Heng Li 8907e9c64f r243: Merge branch 'master' into dev-lh3 2020-04-13 15:18:21 -04:00
Heng Li 946a0f4115 r238: got rid of LIS chaining 2020-04-13 14:44:10 -04:00
Heng Li b333addb6c r237: fall back to DP chaining more often 2020-04-13 08:39:05 -04:00
chhylp123 b93baa3cbd update README 2020-04-12 20:46:54 -04:00
Heng Li cc166c8ff5 r235: clarified option -f 2020-04-12 19:42:02 -04:00
Heng Li cdd5f3e4e0 r234: fixed a bug for -r of an odder number 2020-04-12 19:25:53 -04:00