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656 Commits 11 Branches 54 Tags
a137a6b06fface074f9dceb29b6c5c7a25dd4dec
Commit Graph
65 Commits
Author SHA1 Message Date
chhylp123 a137a6b06f r878 2026-03-28 11:02:52 -04:00
chhylp123 aa4d12b1c6 simd version 0 2026-03-24 17:54:36 -04:00
chhylp123 9a2884f518 backup avx 2026-03-20 16:06:06 -04:00
chhylp123 5e5a1568ed error est funcion 2026-03-17 17:27:48 -04:00
chhylp123 c0478830e6 err_estimate 2026-03-01 08:51:53 -05:00
chhylp123 2fa4ef224f updating final overlapping 2026-02-17 18:07:49 -05:00
chhylp123 86311effb9 running time bug fixed 2026-02-16 10:46:28 -05:00
chhylp123 d6ba102d42 r852 -> hybrid correction 2026-02-11 16:38:27 -05:00
chhylp123 b3b18ab1d0 r721 2025-03-14 01:40:21 -04:00
chhylp123 a96191560e eliminate SVs 2025-03-10 16:09:02 -04:00
chhylp123 3067771783 update for low coverge data 2024-12-16 06:25:31 -05:00
chhylp123 676385cf8e ont simplex support 2024-11-27 13:27:13 -05:00
chhylp123 80fa5ed436 ONT EC 2024-11-12 23:53:29 -05:00
chhylp123 6de4e14782 update before fly HPC 2024-10-29 14:59:52 -04:00
chhylp123 ade800990e update for reference read hpc 2024-10-27 13:22:06 -04:00
chhylp123 e8b18560a5 0.20.0-r631 2024-10-09 17:09:10 -04:00
chhylp123 d5f8a8a6c0 new ec model 2024-06-30 19:53:51 -04:00
chhylp123 3abd3793fb clean graph alignment 2023-02-20 14:50:55 -05:00
chhylp123 286b897881 r513 2023-02-16 00:04:06 -05:00
chhylp123 0613b18af9 r493 ->HiC/UL/Trans 2023-01-11 20:38:45 -05:00
chhylp123 612c1ab712 cuttoff before debugging 2022-11-05 09:03:23 -04:00
chhylp123 df3e0eeaa3 read extract 2022-10-19 13:23:25 -04:00
chhylp123 f92cef38f2 uodate gchain 2022-10-07 15:14:08 -04:00
chhylp123 8a4d6a5f24 done alignemnt 2022-10-04 15:31:23 -04:00
chhylp123 41437764f0 before window filling 2022-10-01 23:42:38 -04:00
chhylp123 bbd3394b4a lack final alignment 2022-10-01 19:53:02 -04:00
chhylp123 20a7dac82a backup for minimizer 2022-09-28 11:16:09 -04:00
chhylp123 4c873f9a66 large extension 2022-09-24 22:39:07 -04:00
chhylp123 38e00d2086 shared seeds 2022-09-23 22:17:38 -04:00
chhylp123 f4cc895fa0 update ed 2022-09-20 22:48:59 -04:00
chhylp123 4e7bb7eeb9 fix cigar 2022-09-18 23:17:58 -04:00
chhylp123 5da05f308f extend ed alignment 2022-09-13 17:29:27 -04:00
chhylp123 7b89478b2e code clean 2022-08-28 02:39:05 -04:00
chhylp123 832e43fe3b smaller cigar size 2022-05-12 18:31:31 -04:00
chhylp123 a2198891e7 smaller memory requirement 2022-05-12 16:15:58 -04:00
chhylp123 9c6a3607d1 intergration correctio 2022-03-01 20:25:53 -05:00
chhylp123 0ce5a7ba5b integration/print het sites 2022-01-17 18:29:48 -05:00
chhylp123 7af0d85258 backup 2021-12-29 21:22:43 -05:00
chhylp123 b640289b19 better read phasing 2021-12-07 22:47:52 -05:00
chhylp123 fda13cb0e4 update -z 2021-02-02 12:45:50 -05:00
chhylp123 9d4e3b3283 update polishing 2020-10-18 17:59:31 -04:00
chhylp123 724990cbe7 freeze-r304 2020-08-23 23:34:36 -04:00
chhylp123 03cf0d475c save bfore multiple overlaps 2020-08-23 08:46:33 -04:00
chhylp123 ace34ae2b8 for high-het and coverage 2020-07-28 13:07:35 -04:00
chhylp123 c01b593d7c using coverage 2020-07-12 16:03:01 -04:00
Heng Li 3364a29b87 r249: make max overlap error rate CLI options 2020-05-06 01:16:50 -04:00
Heng Li 483ceb852c r179: replace one qsort() with ks_introsort() 2020-04-02 10:34:43 -04:00
Haoyu Cheng 4ac9907e49 clean code 2019-12-26 02:26:24 -05:00
Haoyu Cheng 1ead2d3081 M50 improved 2019-12-23 09:37:26 -05:00
Haoyu Cheng 06556e4a9b backup without bundaries processing 2019-12-17 16:58:20 -05:00