132 Commits

Author	SHA1	Message	Date
chhylp123	70fd9a0b1f	keeping more telomeres	2024-05-06 04:02:20 -04:00
chhylp123	61ceb3a4e1	fix bubble issue	2023-11-06 00:09:38 -05:00
chhylp123	4ca8951f9d	fix bug for gen_contain_consensus_chain	2023-10-22 13:23:27 -04:00
chhylp123	281ae6ba89	add scaffolding	2023-10-10 12:40:29 -04:00
chhylp123	c7685e6f19	checkpoint for scaffolding	2023-09-15 12:58:34 -04:00
chhylp123	858b95a3bb	disable multiple assertions	2023-08-17 19:58:35 -04:00
chhylp123	adeb2c603d	trio-dual/bug for hic phasing	2023-05-31 14:54:50 -04:00
chhylp123	86b7dd424a	avoid misassemblies; better polyploidy graph	2023-03-22 12:23:53 -04:00
chhylp123	d4773a497f	disable postjoin for the ul assembly	2023-03-13 15:43:22 -04:00
chhylp123	f67faa9c34	path-max and path-min to avoid misassemblies	2023-03-13 11:13:57 -04:00
chhylp123	b533067835	enable dbg-ovec	2023-03-10 23:30:24 -05:00
chhylp123	af4be8ca1a	disable integer correction; disable contain dedup	2023-03-10 09:12:07 -05:00
chhylp123	286b897881	r513	2023-02-16 00:04:06 -05:00
chhylp123	f2da12a2ad	508 —> futhur graph cleaning	2023-02-12 22:49:12 -05:00
chhylp123	1166b92eb4	r502->additional alignment	2023-01-25 09:39:41 -05:00
chhylp123	25d6857d44	r499->false duplications	2023-01-17 04:49:56 -05:00
chhylp123	2bf5119bb5	update help information	2023-01-12 01:22:34 -05:00
chhylp123	0613b18af9	r493 ->HiC/UL/Trans	2023-01-11 20:38:45 -05:00
chhylp123	a674110b23	fixed het/hom node bugs	2022-12-08 03:07:14 -05:00
chhylp123	a3b72457f0	cleaner assembly graph	2022-12-06 09:52:00 -05:00
chhylp123	9831afaf26	code clean	2022-11-17 09:31:56 -05:00
chhylp123	5da05f308f	extend ed alignment	2022-09-13 17:29:27 -04:00
chhylp123	3064e1373b	better uovlp saving	2022-04-22 23:10:21 -04:00
chhylp123	9c79bdfe7f	UL_gdp	2022-04-13 16:15:03 -04:00
chhylp123	0ce5a7ba5b	integration/print het sites	2022-01-17 18:29:48 -05:00
chhylp123	b640289b19	better read phasing	2021-12-07 22:47:52 -05:00
chhylp123	763634e1a9	kpt_dup	2021-11-28 19:35:32 -05:00
chhylp123	7dd4a848b9	debug graph	2021-09-26 13:51:13 -04:00
chhylp123	809ca18dda	r373	2021-09-10 17:17:44 -04:00
chhylp123	17b5cb21d3	tmp macro	2021-08-30 09:30:48 -04:00
chhylp123	e230b3a55f	0.16.0 release	2021-08-22 21:58:00 -04:00
chhylp123	37b07e4d33	better seeding	2021-08-22 09:53:34 -04:00
chhylp123	bfff640a82	dp opt	2021-08-12 11:16:10 -04:00
chhylp123	3c8a933b8a	Merge remote-tracking branch 'origin/dev-lh3'	2021-07-27 19:50:29 -04:00
chhylp123	321acb2d8a	update for r350	2021-07-26 00:16:00 -04:00
chhylp123	b14f894160	seperate purgeing and hom peak	2021-07-25 11:23:06 -04:00
chhylp123	62b7418257	update 0.15.5	2021-07-22 00:59:52 -04:00
chhylp123	5a400af39d	r342-misjoin	2021-06-19 14:09:09 -04:00
chhylp123	24e5453781	bug fix	2021-05-02 14:16:36 -04:00
chhylp123	11430d6a3b	r329	2021-04-25 14:50:36 -04:00
chhylp123	c972c64b39	add "n-weight"	2021-04-24 00:03:36 -04:00
chhylp123	efacf8e796	bug fixing	2021-04-16 22:26:28 -04:00
chhylp123	f8ee584291	code clean	2021-04-16 20:28:48 -04:00
chhylp123	ebfc04d253	clean purge_dups	2021-04-03 16:26:58 -04:00
chhylp123	46e899bbae	backup r321	2021-04-01 21:02:57 -04:00
Heng Li	863b20773a	Merge branch 'master' into dev-lh3	2021-03-18 16:11:43 -04:00
chhylp123	98a04c168a	update r313	2021-03-18 05:26:33 -04:00
chhylp123	4c2ce6fc6b	update trans chain	2021-03-10 22:46:50 -05:00
chhylp123	8aa87fdce8	purge_dups for high het	2021-03-08 20:52:11 -05:00
Heng Li	8e98fb2276	Merge branch 'master' into dev-lh3	2021-03-02 19:27:44 -05:00