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645 Commits 11 Branches 54 Tags
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99 Commits
Author SHA1 Message Date
chhylp123 3067771783 update for low coverge data 2024-12-16 06:25:31 -05:00
chhylp123 676385cf8e ont simplex support 2024-11-27 13:27:13 -05:00
chhylp123 e8b18560a5 0.20.0-r631 2024-10-09 17:09:10 -04:00
chhylp123 70fd9a0b1f keeping more telomeres 2024-05-06 04:02:20 -04:00
chhylp123 4ca8951f9d fix bug for gen_contain_consensus_chain 2023-10-22 13:23:27 -04:00
chhylp123 281ae6ba89 add scaffolding 2023-10-10 12:40:29 -04:00
chhylp123 84e642d20d fix bubble on-the-fly 2023-04-13 10:16:14 -04:00
chhylp123 5df5892f33 update for rescuing missing contigs 2023-04-06 23:14:41 -04:00
chhylp123 86b7dd424a avoid misassemblies; better polyploidy graph 2023-03-22 12:23:53 -04:00
chhylp123 85c643e85d clean contained read; fixed for deep_graph_clean 2023-03-07 15:28:24 -05:00
chhylp123 a0f2f70d91 better resolution for complex regions 2023-02-27 09:35:50 -05:00
chhylp123 286b897881 r513 2023-02-16 00:04:06 -05:00
chhylp123 f2da12a2ad 508 —> futhur graph cleaning 2023-02-12 22:49:12 -05:00
chhylp123 1166b92eb4 r502->additional alignment 2023-01-25 09:39:41 -05:00
chhylp123 46391eba26 fix bubble popping bugs 2023-01-15 22:29:20 -05:00
chhylp123 0613b18af9 r493 ->HiC/UL/Trans 2023-01-11 20:38:45 -05:00
chhylp123 fc76af1285 fixed gap filling with UL 2022-11-25 11:46:37 -05:00
chhylp123 9831afaf26 code clean 2022-11-17 09:31:56 -05:00
chhylp123 2c7b164f11 tmp cache 2022-11-10 19:37:52 -05:00
chhylp123 249bee7304 done contain clean 2022-10-27 17:05:46 -04:00
chhylp123 df3e0eeaa3 read extract 2022-10-19 13:23:25 -04:00
chhylp123 ee51a6dddc seperate alignment 2022-09-04 00:18:51 -04:00
chhylp123 cc16626dfa debug cigar_offset 2022-09-01 23:16:08 -04:00
chhylp123 89e0d1aafa UL graph with graph cleaning 2022-08-02 15:48:16 -04:00
chhylp123 33afa25398 UL graph done 2022-07-24 18:13:16 -04:00
chhylp123 e8399b18f1 fixed duplicated chaining issue 2022-05-03 17:35:43 -04:00
chhylp123 fdf24d5589 fix memory bug/logic bug 2022-05-01 00:37:32 -04:00
chhylp123 3064e1373b better uovlp saving 2022-04-22 23:10:21 -04:00
chhylp123 9c79bdfe7f UL_gdp 2022-04-13 16:15:03 -04:00
chhylp123 60236cd967 debug uc_block_t 2022-03-21 22:00:30 -04:00
chhylp123 d3b9de4120 new gchain 2022-03-16 01:13:27 -04:00
chhylp123 9c6a3607d1 intergration correctio 2022-03-01 20:25:53 -05:00
chhylp123 0ce5a7ba5b integration/print het sites 2022-01-17 18:29:48 -05:00
chhylp123 9ec286e64e new ul 2021-12-11 14:55:36 -05:00
chhylp123 1e2a9518e5 print dup log 2021-11-29 15:11:02 -05:00
chhylp123 763634e1a9 kpt_dup 2021-11-28 19:35:32 -05:00
chhylp123 7dd4a848b9 debug graph 2021-09-26 13:51:13 -04:00
chhylp123 ab80851b94 mempcpy -> memcpy 2021-09-12 17:43:43 -04:00
chhylp123 809ca18dda r373 2021-09-10 17:17:44 -04:00
chhylp123 37b07e4d33 better seeding 2021-08-22 09:53:34 -04:00
chhylp123 5a400af39d r342-misjoin 2021-06-19 14:09:09 -04:00
chhylp123 aa164949f2 backup phasing 2021-05-31 04:19:05 -04:00
chhylp123 e774a83be2 debug mbg 2021-05-30 09:02:25 -04:00
chhylp123 a39f01f4d8 haplotype popping 2021-05-24 19:43:50 -04:00
chhylp123 9e6dde7fb2 backpup 2021-05-22 10:48:49 -04:00
chhylp123 b12e008416 new somatic variant popping 2021-05-19 09:52:40 -04:00
chhylp123 be8e1e3117 sc debug 2021-05-17 00:12:41 -04:00
chhylp123 4105dd360e correction 2021-05-11 13:01:06 -04:00
chhylp123 7918396d21 collect contig alignment + renew_utg bug fixed 2021-05-09 17:47:50 -04:00
chhylp123 9ea4f6917f resolve centromere 2021-05-06 07:59:51 -04:00