82 Commits

Author	SHA1	Message	Date
chhylp123	adeb2c603d	trio-dual/bug for hic phasing	2023-05-31 14:54:50 -04:00
chhylp123	86b7dd424a	avoid misassemblies; better polyploidy graph	2023-03-22 12:23:53 -04:00
chhylp123	3407c7029e	coverage adjustment for polyploidy	2023-03-12 17:02:29 -04:00
chhylp123	7ad498f631	r495-reuse misjoin detection	2023-01-12 00:21:43 -05:00
chhylp123	0613b18af9	r493 ->HiC/UL/Trans	2023-01-11 20:38:45 -05:00
chhylp123	a3b72457f0	cleaner assembly graph	2022-12-06 09:52:00 -05:00
chhylp123	786f8bdff0	r465	2022-12-02 09:40:25 -05:00
chhylp123	9831afaf26	code clean	2022-11-17 09:31:56 -05:00
chhylp123	2c7b164f11	tmp cache	2022-11-10 19:37:52 -05:00
chhylp123	98bb89227e	integer correction	2022-06-07 16:56:28 -04:00
chhylp123	763634e1a9	kpt_dup	2021-11-28 19:35:32 -05:00
chhylp123	5e84db0ec9	adjust skew weight	2021-09-10 17:18:48 -04:00
chhylp123	809ca18dda	r373	2021-09-10 17:17:44 -04:00
chhylp123	37b07e4d33	better seeding	2021-08-22 09:53:34 -04:00
chhylp123	b14f894160	seperate purgeing and hom peak	2021-07-25 11:23:06 -04:00
chhylp123	62b7418257	update 0.15.5	2021-07-22 00:59:52 -04:00
chhylp123	0410662841	print misjoin debug	2021-06-23 09:49:44 -04:00
chhylp123	5a400af39d	r342-misjoin	2021-06-19 14:09:09 -04:00
chhylp123	e3b721c29a	r340	2021-06-16 16:44:08 -04:00
chhylp123	5b0a0c85ef	ovlp filter	2021-06-13 17:35:09 -04:00
chhylp123	9dc530cbfb	low hamming for sampels with low het rate	2021-06-09 20:10:50 -04:00
chhylp123	aa164949f2	backup phasing	2021-05-31 04:19:05 -04:00
chhylp123	e774a83be2	debug mbg	2021-05-30 09:02:25 -04:00
chhylp123	a39f01f4d8	haplotype popping	2021-05-24 19:43:50 -04:00
chhylp123	626787ab8a	complex cleaning	2021-05-20 17:03:18 -04:00
chhylp123	5c1680e998	fix missed ug when bubble popping	2021-05-19 10:16:23 -04:00
chhylp123	b12e008416	new somatic variant popping	2021-05-19 09:52:40 -04:00
chhylp123	be8e1e3117	sc debug	2021-05-17 00:12:41 -04:00
chhylp123	4105dd360e	correction	2021-05-11 13:01:06 -04:00
chhylp123	7918396d21	collect contig alignment + renew_utg bug fixed	2021-05-09 17:47:50 -04:00
chhylp123	9ea4f6917f	resolve centromere	2021-05-06 07:59:51 -04:00
chhylp123	24e5453781	bug fix	2021-05-02 14:16:36 -04:00
chhylp123	9c205c8271	resove tangle by hic	2021-04-30 22:44:48 -04:00
chhylp123	71e91f3fc2	assgin disconnected parts	2021-04-28 20:27:43 -04:00
chhylp123	2fc2268268	phasing improvement	2021-04-27 21:35:49 -04:00
chhylp123	1456686665	fast weight	2021-04-25 06:05:23 -04:00
chhylp123	c972c64b39	add "n-weight"	2021-04-24 00:03:36 -04:00
chhylp123	7b07e355b7	bug fix for bubble scanning	2021-04-23 20:40:43 -04:00
chhylp123	a5b29b00bd	topo phasing	2021-04-22 22:38:52 -04:00
chhylp123	278efaa876	block phasing	2021-04-21 10:58:58 -04:00
chhylp123	475ebb8075	keep long range information	2021-04-20 01:29:15 -04:00
chhylp123	39c19618e8	backup hic	2021-04-18 21:57:16 -04:00
chhylp123	49ead1ef35	bub disable	2021-04-17 04:23:32 -04:00
chhylp123	4bc43cec92	bug fixed	2021-04-17 00:31:19 -04:00
chhylp123	efacf8e796	bug fixing	2021-04-16 22:26:28 -04:00
chhylp123	f8ee584291	code clean	2021-04-16 20:28:48 -04:00
chhylp123	1e86e3dc02	best flipping	2021-04-14 18:50:20 -04:00
chhylp123	67c7218264	fix distance bug	2021-04-13 01:18:49 -04:00
chhylp123	36afbce9bc	update unitig distance	2021-04-12 04:54:06 -04:00
chhylp123	7235f6426f	back_up_hic	2021-04-11 10:59:26 -04:00