82 Commits

Author	SHA1	Message	Date
Heng Li	ef8c047559	removed unused ha_sketch	2020-10-29 11:28:43 -04:00
chhylp123	b2b4624cea	rerelease v0.13	2020-10-22 14:24:59 -04:00
chhylp123	91d4915da7	release v0.13	2020-10-21 21:57:43 -04:00
chhylp123	04f94514ee	fix circle	2020-10-19 19:51:17 -04:00
chhylp123	b1f844801a	fix c->l bug	2020-10-19 16:39:53 -04:00
chhylp123	e5d503ea65	update polishing	2020-10-19 13:22:45 -04:00
chhylp123	9d4e3b3283	update polishing	2020-10-18 17:59:31 -04:00
chhylp123	753ea81194	reomve redundancy	2020-10-16 18:08:12 -04:00
chhylp123	89fcb35a64	for debugging	2020-10-11 14:32:33 -04:00
chhylp123	03cf0d475c	save bfore multiple overlaps	2020-08-23 08:46:33 -04:00
chhylp123	a8aa37d201	fix makefile	2020-08-05 17:45:23 -04:00
chhylp123	320dc58127	fix bug at r_utg	2020-08-04 16:43:50 -04:00
chhylp123	9d659fd2e0	update v0.10	2020-07-31 12:23:25 -04:00
chhylp123	ace34ae2b8	for high-het and coverage	2020-07-28 13:07:35 -04:00
chhylp123	952471657f	change max coverage of pri-range	2020-07-18 17:40:58 -04:00
chhylp123	fda858f9e7	update coverage	2020-07-13 22:34:26 -04:00
chhylp123	c01b593d7c	using coverage	2020-07-12 16:03:01 -04:00
chhylp123	a25c37ed89	update k-mer peaks	2020-07-07 13:20:25 -04:00
chhylp123	2e56ef7db5	apply coverage to purge_dups	2020-07-06 10:02:03 -04:00
chhylp123	449950cddb	update readme	2020-06-27 10:57:22 -04:00
chhylp123	71f6c93d58	add options	2020-06-08 17:51:36 -04:00
Heng Li	eddbc61952	r254: added --ex-list and --ex-iter	2020-06-03 20:46:34 -04:00
Heng Li	e247c5f042	r253: Merge branch 'master' into dev-lh3	2020-05-23 21:43:22 -04:00
chhylp123	d36e1e7782	fixed bugs for trio-binning	2020-05-17 11:53:12 -04:00
Heng Li	3364a29b87	r249: make max overlap error rate CLI options	2020-05-06 01:16:50 -04:00
chhylp123	7f6725ead3	expose purge_dups	2020-04-18 00:45:47 -04:00
Heng Li	85c57fd087	r246: made purge_dups optional for trio binning	2020-04-15 23:57:18 -04:00
Heng Li	2d985569f1	Merge branch 'master' into dev-lh3	2020-04-12 18:57:42 -04:00
chhylp123	57b16e9e1f	fix warning	2020-04-12 17:46:30 -04:00
chhylp123	b245e9a760	fix warning	2020-04-12 17:46:20 -04:00
Heng Li	c4397a9400	r226: more careful about ma_hit_t_alloc memory	2020-04-11 22:05:07 -04:00
chhylp123	20c6c1d2e6	update trio-binning	2020-04-10 23:32:15 -04:00
Heng Li	ad1b79a6bb	Merge branch 'flt-p' into dev-lh3	2020-04-10 14:03:44 -04:00
chhylp123	943b6947cb	update purge_dup by LIS	2020-04-10 13:58:36 -04:00
Heng Li	f32bfc904a	r215: prepare for list-based binning	2020-04-10 00:12:19 -04:00
Heng Li	7a35bd7fcc	r213: renamed trio binning output files	2020-04-09 20:40:01 -04:00
Heng Li	c41aae0630	r211: added --write-paf/--write-ec/--skip-triobin	2020-04-08 22:32:54 -04:00
chhylp123	a288415111	bug fixing for purge_dup	2020-04-08 16:55:04 -04:00
chhylp123	87fc103e63	fix small bug	2020-04-06 02:03:34 -04:00
Heng Li	46f83e152d	r199: renamed pre.ovlp.bin to pre.ec.bin ... Also updated the Makefile dependencies	2020-04-05 13:45:50 -04:00
Heng Li	0f1994fc1f	r198: made VERBOSE_GFA a CL option --dbg-gfa	2020-04-05 13:01:03 -04:00
Heng Li	5917aa2f36	Merge branch 'chain-tune' into merge2	2020-04-05 12:07:13 -04:00
chhylp123	ac3fcc339a	for purge_dup	2020-04-05 11:10:56 -04:00
Heng Li	76de054331	r186: fixed memory leaks when loading from disk	2020-04-03 20:35:47 -04:00
Heng Li	992322f8e3	r185: fixed a few more memory leaks	2020-04-03 20:14:20 -04:00
Heng Li	968b4caef9	r181: limit the max number of chains	2020-04-02 21:55:00 -04:00
Heng Li	64edb06e08	NOT WORKING!!! added all k-mer counter	2020-03-24 12:29:46 -04:00
Heng Li	cfb0a5c8ec	reduced the position to 32 bits	2020-03-23 09:54:42 -04:00
chhylp123	3c1d3cf6a1	disable debug	2020-03-23 00:25:20 -04:00
chhylp123	90e290636a	code clean	2020-03-22 17:06:36 -04:00